Predicting pesticide vapour pressures: the power of functional groups

Explainable machine learning can aid in deriving chemical rules, which in combination with inverse molecular design methods, can support humans to optimise classes of molecules such as pesticides. This study demonstrates that pesticide vapour pressures can be predicted (77.1% and 83.3% within one order of magnitude) using kernel ridge regression (krr) and XGBoost on quantum chemical molecular properties but these models lack easy interpretability. However, insights (<i>via</i> Shapley additive explanations (SHAP)) can be gained when a framework of functional groups is employed instead. Functional group-based models (krr: 66.7% within one order of magnitude) reveal that aromatic compounds, sulfonic acid derivatives, and carboxylic acid derivatives influence the vapour pressure the most. SHAP value trends indicate a linear relationship between reduced vapour pressure and the frequency of functional groups. A provided list of functional group contributions enables molecular modifications to optimise pesticide vapour pressures.

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Journal
Physical Chemistry Chemical Physics
Published
2025-01-01
DOI
https://doi.org/10.1039/d5cp01965f
Primary Topic
Computational Drug Discovery Methods
Type
article
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article

Predicting pesticide vapour pressures: the power of functional groups

Manuel Alcamı́, Clemens Rauer, Freija De Vleeschouwer, Mark Heezen
Physical Chemistry Chemical Physics
Computational Drug Discovery Methods
article

Predicting pesticide vapour pressures: the power of functional groups

Manuel Alcamı́, Clemens Rauer, Freija De Vleeschouwer, Mark Heezen
article en

Abstract

Explainable machine learning can aid in deriving chemical rules, which in combination with inverse molecular design methods, can support humans to optimise classes of molecules such as pesticides. This study demonstrates that pesticide vapour pressures can be predicted (77.1% and 83.3% within one order of magnitude) using kernel ridge regression (krr) and XGBoost on quantum chemical molecular properties but these models lack easy interpretability. However, insights (<i>via</i> Shapley additive explanations (SHAP)) can be gained when a framework of functional groups is employed instead. Functional group-based models (krr: 66.7% within one order of magnitude) reveal that aromatic compounds, sulfonic acid derivatives, and carboxylic acid derivatives influence the vapour pressure the most. SHAP value trends indicate a linear relationship between reduced vapour pressure and the frequency of functional groups. A provided list of functional group contributions enables molecular modifications to optimise pesticide vapour pressures.

Physical Chemistry Chemical PhysicsVol. 27(42)
Vrije Universiteit Brussel (BE), Universidad Autónoma de Madrid (ES)
Openalex Percentile: Top 71%
Computational Drug Discovery Methods
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Predicting pesticide vapour pressures: the power of functional groups — Manuel Alcamı́, Clemens Rauer, et al. · Physical Chemistry Chemical Physics (2025) | TGRS Research Map | TGRS