Development of Single‐Molecule Enzyme Activity Assay for Serine Hydrolases Using Activity‐Based Protein Labeling Probes

Single-molecule enzyme activity assays have proven their potential in elucidating aberrant protein function at the proteoform level. However, the limited number of targetable enzymes is the major drawback of such assays. Here, the development of single-molecule enzyme activity assays utilizes activity-based probes that label active enzymes in an enzyme superfamily-wide manner. A proof-of-principle using fluorophosphonate-based probes is conducted to detect the active form of serine hydrolases such as PSA and granzyme B at the single-molecule level in complex biological systems such as blood. The assay suggests that active granzyme B in blood may serve as an indicator of liver damage associated with immune cell activation.

Authors

Institutions

Publication Details

Journal
Small Methods
Published
2025-09-29
DOI
https://doi.org/10.1002/smtd.202501643
Primary Topic
Click Chemistry and Applications
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Development of Single‐Molecule Enzyme Activity Assay for Serine Hydrolases Using Activity‐Based Protein Labeling Probes

Tadahaya Mizuno, Shoken Ishii, Yasuteru Urano, Kazufumi Honda et al.
Small Methods
Click Chemistry and Applications
article

Development of Single‐Molecule Enzyme Activity Assay for Serine Hydrolases Using Activity‐Based Protein Labeling Probes

Tadahaya Mizuno, Shoken Ishii, Yasuteru Urano, Kazufumi Honda, Toru Komatsu, Hiroyuki Kusuhara, Mayano Minoda, T. Iwasaka
article en

Abstract

Single-molecule enzyme activity assays have proven their potential in elucidating aberrant protein function at the proteoform level. However, the limited number of targetable enzymes is the major drawback of such assays. Here, the development of single-molecule enzyme activity assays utilizes activity-based probes that label active enzymes in an enzyme superfamily-wide manner. A proof-of-principle using fluorophosphonate-based probes is conducted to detect the active form of serine hydrolases such as PSA and granzyme B at the single-molecule level in complex biological systems such as blood. The assay suggests that active granzyme B in blood may serve as an indicator of liver damage associated with immune cell activation.

Small MethodsVol. 9(11)
The University of Tokyo (JP), Nippon Medical School (JP)
Openalex Percentile: Top 80%
Click Chemistry and Applications
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.