MetaMolGen: A Neural Graph Motif Generation Model for De Novo Molecular Design

Molecular generation is crucial for drug discovery and materials science, especially under data-scarce conditions where traditional generative models often fail to generalize conditionally. To address this, we propose MetaMolGen, a first-order meta-learning-based molecular generator tailored for few-shot and property-conditioned generation. MetaMolGen standardizes graph motifs by mapping them into a normalized latent space and employs a lightweight autoregressive model to generate SMILES sequences that accurately reflect molecular structures. A learnable property projector is integrated into the generation process to support target property conditioning. Experiments show that MetaMolGen consistently generates valid and diverse molecules in low-data regimes, outperforming conventional baselines and demonstrating strong adaptability and efficient conditional generation.

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Publication Details

Journal
match Communications in Mathematical and in Computer Chemistry
Published
2026-05-27
DOI
https://doi.org/10.46793/match.97-2.11226
Primary Topic
Machine Learning in Materials Science
Type
article
Field-Weighted Citation Impact
0.00

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article

MetaMolGen: A Neural Graph Motif Generation Model for De Novo Molecular Design

Yizhen Liu, Jie Zhang, Yiping Song, Chang Liu et al.
match Communications in Mathematical and in Computer Chemistry
Machine Learning in Materials Science
article

MetaMolGen: A Neural Graph Motif Generation Model for De Novo Molecular Design

Yizhen Liu, Jie Zhang, Yiping Song, Chang Liu, Zheng Xie
article en

Abstract

Molecular generation is crucial for drug discovery and materials science, especially under data-scarce conditions where traditional generative models often fail to generalize conditionally. To address this, we propose MetaMolGen, a first-order meta-learning-based molecular generator tailored for few-shot and property-conditioned generation. MetaMolGen standardizes graph motifs by mapping them into a normalized latent space and employs a lightweight autoregressive model to generate SMILES sequences that accurately reflect molecular structures. A learnable property projector is integrated into the generation process to support target property conditioning. Experiments show that MetaMolGen consistently generates valid and diverse molecules in low-data regimes, outperforming conventional baselines and demonstrating strong adaptability and efficient conditional generation.

match Communications in Mathematical and in Computer ChemistryVol. 97 (2027)(2)
National University of Defense Technology (CN)
National Natural Science Foundation of China
Openalex Percentile: Top 100%
Machine Learning in Materials Science
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