Emerging AI approaches for cancer spatial omics

Technological breakthroughs in spatial omics and artificial intelligence (AI) have the potential to transform the understanding of cancer cells and the tumor microenvironment. Here we review the role of AI in spatial omics, discussing the current state-of-the-art and further needs to decipher cancer biology from large-scale spatial tissue data. An overarching challenge is the development of interpretable spatial AI models, an activity which demands not only improved data integration, but also new conceptual frameworks. We discuss emerging paradigms, in particular data-driven spatial AI, constraint-based spatial AI, and mechanistic spatial modeling, as well as the importance of integrating AI with hypothesis-driven strategies and model systems to realize the value of cancer spatial information.

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Publication Details

Journal
GigaScience
Published
2025-01-01
DOI
https://doi.org/10.1093/gigascience/giaf128
Citations
2
Primary Topic
Single-cell and spatial transcriptomics
Type
article
Field-Weighted Citation Impact
1.61

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article

Emerging AI approaches for cancer spatial omics

Javad Noorbakhsh, Ali Foroughi pour, Jeffrey H. Chuang
2 citations
GigaScience
Single-cell and spatial transcriptomics
1.61
article

Emerging AI approaches for cancer spatial omics

Javad Noorbakhsh, Ali Foroughi pour, Jeffrey H. Chuang
article en
2 citations

Abstract

Technological breakthroughs in spatial omics and artificial intelligence (AI) have the potential to transform the understanding of cancer cells and the tumor microenvironment. Here we review the role of AI in spatial omics, discussing the current state-of-the-art and further needs to decipher cancer biology from large-scale spatial tissue data. An overarching challenge is the development of interpretable spatial AI models, an activity which demands not only improved data integration, but also new conceptual frameworks. We discuss emerging paradigms, in particular data-driven spatial AI, constraint-based spatial AI, and mechanistic spatial modeling, as well as the importance of integrating AI with hypothesis-driven strategies and model systems to realize the value of cancer spatial information.

GigaScienceVol. 14
St. Jude Children's Research Hospital (US), Jackson Laboratory (US), UConn Health (US)
National Institutes of Health
Openalex Percentile: Top 15%
Single-cell and spatial transcriptomics
1.61
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