Streamline automated biomedical discoveries with agentic bioinformatics

The emergence of artificial intelligence agents powered by large language models marks a transformative shift in computational biology. In this new paradigm, autonomous, adaptive, and intelligent agents are deployed to tackle complex biological challenges, leading to a new research field named agentic bioinformatics. Here, we explore the core principles, evolving methodologies, and diverse applications of agentic bioinformatics. We examine how agentic bioinformatics systems work synergistically to facilitate data-driven decision-making and enable self-directed exploration of biological datasets. Furthermore, we highlight the integration of agentic frameworks in key areas such as personalized medicine, drug discovery, and synthetic biology, illustrating their potential to revolutionize healthcare and biotechnology. In addition, we address the ethical, technical, and scalability challenges associated with agentic bioinformatics, identifying key opportunities for future advancements. By emphasizing the importance of interdisciplinary collaboration and innovation, we envision agentic bioinformatics as a major force in overcoming the grand challenges of modern biology, ultimately advancing both research and clinical applications.

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Publication Details

Journal
Briefings in Bioinformatics
Published
2025-08-31
DOI
https://doi.org/10.1093/bib/bbaf505
Citations
6
Primary Topic
Biomedical Text Mining and Ontologies
Type
article
Field-Weighted Citation Impact
4.84

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article

Streamline automated biomedical discoveries with agentic bioinformatics

Jindong Jiang, Xin Gao, Zhongyi Han, Zijian Wang et al.
6 citations
Briefings in Bioinformatics
Biomedical Text Mining and Ontologies
4.84
article

Streamline automated biomedical discoveries with agentic bioinformatics

Jindong Jiang, Xin Gao, Zhongyi Han, Zijian Wang, Juexiao Zhou
article en
6 citations

Abstract

The emergence of artificial intelligence agents powered by large language models marks a transformative shift in computational biology. In this new paradigm, autonomous, adaptive, and intelligent agents are deployed to tackle complex biological challenges, leading to a new research field named agentic bioinformatics. Here, we explore the core principles, evolving methodologies, and diverse applications of agentic bioinformatics. We examine how agentic bioinformatics systems work synergistically to facilitate data-driven decision-making and enable self-directed exploration of biological datasets. Furthermore, we highlight the integration of agentic frameworks in key areas such as personalized medicine, drug discovery, and synthetic biology, illustrating their potential to revolutionize healthcare and biotechnology. In addition, we address the ethical, technical, and scalability challenges associated with agentic bioinformatics, identifying key opportunities for future advancements. By emphasizing the importance of interdisciplinary collaboration and innovation, we envision agentic bioinformatics as a major force in overcoming the grand challenges of modern biology, ultimately advancing both research and clinical applications.

Briefings in BioinformaticsVol. 26(5)
Nanjing Agricultural University (CN), Nanjing Tech University (CN), Shandong University (CN), University of Jinan (CN), Nanjing University of Science and Technology (CN), Candela (United States) (US), Chinese University of Hong Kong, Shenzhen (CN), Department of Mathematical Sciences (RU), SynZyme Technologies (United States) (US), King Abdullah University of Science and Technology (SA), Nanjing University (CN)
King Abdullah University of Science and Technology, Chinese University of Hong Kong
Openalex Percentile: Top 5%
Biomedical Text Mining and Ontologies
4.84
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