Transcriptome analyses identify 10 deregulated hub genes and essential molecular mechanisms in early-onset colorectal cancer

The results of clinical data analysis showed an increased rate of late-stage diagnosis and a lower overall survival of the EoCRC cohort. A total of 953 enriched gene samples were detected in EoCRC and 89 genes were identified as EoCRC overexpression genes. From the protein-protein interactions among 53 genes, the top 10 hub genes showed potential for EoCRC diagnosis and prognosis by linking gene expression to diagnosis and survival analysis data. The knockdown of four selected hub genes in the cell model identified the association of EoCRC overexpression hub genes with tumor development and suggested their role in mTOR signaling, cell cycle, and apoptosis regulation. In summary, the study analyzed molecular and clinical data to identify hub genes associated with cancer prognosis in patients with EoCRC. These genes may serve as targets for diagnosis and treatment.

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Publication Details

Journal
Frontiers in Oncology
Published
2025-09-29
DOI
https://doi.org/10.3389/fonc.2025.1655143
Primary Topic
Genetic factors in colorectal cancer
Type
article
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article

Transcriptome analyses identify 10 deregulated hub genes and essential molecular mechanisms in early-onset colorectal cancer

Yi-Chun Ni, Hieu D. Nguyen, Yung-Fu Wu, Kuen‐Haur Lee et al.
Frontiers in Oncology
Genetic factors in colorectal cancer
article

Transcriptome analyses identify 10 deregulated hub genes and essential molecular mechanisms in early-onset colorectal cancer

Yi-Chun Ni, Hieu D. Nguyen, Yung-Fu Wu, Kuen‐Haur Lee, Ming‐Jenn Chen, Caroline Guat Lay Lee, Ke Xin Yee
article en

Abstract

The results of clinical data analysis showed an increased rate of late-stage diagnosis and a lower overall survival of the EoCRC cohort. A total of 953 enriched gene samples were detected in EoCRC and 89 genes were identified as EoCRC overexpression genes. From the protein-protein interactions among 53 genes, the top 10 hub genes showed potential for EoCRC diagnosis and prognosis by linking gene expression to diagnosis and survival analysis data. The knockdown of four selected hub genes in the cell model identified the association of EoCRC overexpression hub genes with tumor development and suggested their role in mTOR signaling, cell cycle, and apoptosis regulation. In summary, the study analyzed molecular and clinical data to identify hub genes associated with cancer prognosis in patients with EoCRC. These genes may serve as targets for diagnosis and treatment.

Frontiers in OncologyVol. 15
Taipei Medical University Hospital (TW), Ministry of Health and Welfare (TW), Chi Mei Medical Center (TW), Wan Fang Hospital (TW), Taipei Medical University-Shuang Ho Hospital (TW), Taipei Medical University (TW), Chia Nan University of Pharmacy and Science (TW), National Defense Medical Center (TW)
Openalex Percentile: Top 62%
Genetic factors in colorectal cancer
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