A robust platform streamlining aromatic noncanonical amino acid biosynthesis and genetic code expansion in Escherichia coli
Genetic code expansion (GCE) has significantly enhanced the diversity of proteins in the biological world, leading to a wide range of applications. Despite the advances in GCE, the cost of noncanonical amino acids (ncAAs) remains one of the major obstacles for large-scale production. In situ biosynthesis of ncAAs from commercial precursors offers a promising solution to this challenge, yet only a few biosynthetic pathways have been reported. Here, we present a platform that couples the biosynthesis of aromatic ncAAs with genetic code expansion in E. coli, enabling the production of proteins and peptides containing ncAAs. Forty ncAAs are synthesized from aryl aldehydes by the biosynthetic pathway, while nineteen ncAAs are incorporated into superfolder GFP using three orthogonal translation systems. The platform's versatility is demonstrated by the production of macrocyclic peptides and antibody fragments. We envision that the platform will facilitate the production of peptides, enzymes, and antibody fragments containing ncAAs.
Authors
- Cangsong Liao (ORCID: https://orcid.org/0000-0003-4667-7407)
- Keying Yu
- W. R. Zhao (ORCID: https://orcid.org/0000-0001-5261-5910)
- Florian P. Seebeck (ORCID: https://orcid.org/0000-0003-4625-1369)
- Ying Wang (ORCID: https://orcid.org/0000-0002-8577-8545)
- Xiaohua Chen (ORCID: https://orcid.org/0000-0003-3031-7095)
- Yan Xu (ORCID: https://orcid.org/0009-0000-2051-7072)
- Yulian Li (ORCID: https://orcid.org/0000-0001-6551-8984)
- Jingxuan Zhang (ORCID: https://orcid.org/0009-0000-8480-322X)
Institutions
- Nanjing University of Chinese Medicine (CN)
- Tianjin University (CN)
- University of Basel (CH)
- Chinese Academy of Sciences (CN)
- Shanghai Institute of Materia Medica (CN)
- Shanghai Institute of Applied Physics (CN)
- Institute for Advanced Study (DE)
- University of Chinese Academy of Sciences (CN)
Publication Details
- Journal
- Nature Communications
- Published
- 2025-09-29
- DOI
- https://doi.org/10.1038/s41467-025-63679-6
- Citations
- 2
- Primary Topic
- RNA and protein synthesis mechanisms
- Type
- article
- Field-Weighted Citation Impact
- 1.61
Funders
- National Science Foundation
- Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
- National Natural Science Foundation of China
- Chinese Academy of Sciences
- Xiamen University