Retrieval Augmented Document-Level Information Extraction from Scientific Articles Using Large Language Models

Identifying the main results of scientific papers is an important and challenging task. Unlike traditional named entity recognition (NER) in general domains, NER in the scientific field primarily aims to identify and classify specific scientific entity types from scientific literature. This requires handling professional terminology, complex sentence structures, and domain-specific contextual information. Recently, generation methods based on large language models (LLMs) have attempted to co-train models on multiple datasets while using prompt instructions to accurately extract target entities. However, there is currently insufficient exploration of document-level NER methods in the scientific field. To further fill this gap, we propose a document-level information extraction method for scientific literature based on LLMs. Specifically, the method first constructs a document-level labeled dataset to train a binary classifier based on BERT, which determines the relevance of each sentence to the target entities. In the information extraction phase, specific prompt templates are used to guide LLMs in entity recognition and extraction, while performance is enhanced through fine-tuning with the LoRA framework. Extensive experimental evaluations were conducted on two public datasets, covering zero-shot and supervised conditions. The results show that this method significantly improves the performance in document-level information extraction in the scientific field, surpassing traditional methods.

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Publication Details

Journal
Data Intelligence
Published
2025-09-28
DOI
https://doi.org/10.3724/2096-7004.di.2025.0175
Primary Topic
Topic Modeling
Type
article
Field-Weighted Citation Impact
0.00

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article

Retrieval Augmented Document-Level Information Extraction from Scientific Articles Using Large Language Models

X.D. Zhang, Zhichun Wang, Zixin Jiang
Data Intelligence
Topic Modeling
article

Retrieval Augmented Document-Level Information Extraction from Scientific Articles Using Large Language Models

X.D. Zhang, Zhichun Wang, Zixin Jiang
article en

Abstract

Identifying the main results of scientific papers is an important and challenging task. Unlike traditional named entity recognition (NER) in general domains, NER in the scientific field primarily aims to identify and classify specific scientific entity types from scientific literature. This requires handling professional terminology, complex sentence structures, and domain-specific contextual information. Recently, generation methods based on large language models (LLMs) have attempted to co-train models on multiple datasets while using prompt instructions to accurately extract target entities. However, there is currently insufficient exploration of document-level NER methods in the scientific field. To further fill this gap, we propose a document-level information extraction method for scientific literature based on LLMs. Specifically, the method first constructs a document-level labeled dataset to train a binary classifier based on BERT, which determines the relevance of each sentence to the target entities. In the information extraction phase, specific prompt templates are used to guide LLMs in entity recognition and extraction, while performance is enhanced through fine-tuning with the LoRA framework. Extensive experimental evaluations were conducted on two public datasets, covering zero-shot and supervised conditions. The results show that this method significantly improves the performance in document-level information extraction in the scientific field, surpassing traditional methods.

Data IntelligenceVol. 8(1)
Beijing Normal University (CN)
National Natural Science Foundation of China
Openalex Percentile: Top 86%
Topic Modeling
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