Bioinformatics Analysis and Expression Profiling Under Abiotic Stress of the DREB Gene Family in Glycyrrhiza uralensis

<i>Glycyrrhiza uralensis</i> is an important medicinal plant exhibiting strong tolerance to abiotic stresses, including drought and salinity. DREB (Dehydration-Responsive Element-Binding) transcription factors, key members of the AP2/ERF family, play crucial roles in plant growth, development, and stress responses. Based on transcriptome data, we identified 18 DREB transcription factors in <i>G. uralensis</i>, designated <i>GuDREB1</i> to <i>GuDREB18</i>. Bioinformatics analysis revealed genomic sequences ranging from 534 to 2864 bp and coding sequence (CDS) lengths between 525 and 1509 bp. All GuDREB proteins contain a single AP2 domain, including the conserved YRG and RAYD elements, and were predicted to localize to the nucleus. Phylogenetic analysis clustered the <i>G. uralensis</i> DREBs with 61 <i>Arabidopsis thaliana</i> DREBs into five subgroups, indicating evolutionary conservation. Promoter analysis detected seventeen stress-responsive <i>cis</i>-acting elements, encompassing hormone-responsive and abiotic stress-responsive motifs, suggesting diverse biological functions. Tissue-specific expression profiling revealed <i>GuDREB</i> transcription in both aerial and underground parts. Drought stress induced varying degrees of <i>GuDREB</i> expression, confirming their involvement in stress responses. Notably, <i>GuDREB10</i> expression increased significantly in underground parts, while <i>GuDREB15</i> showed pronounced upregulation in aerial parts under drought; the <i>GuDREB15</i> promoter contained the highest number of light-responsive elements (23), potentially explaining its aerial tissue specificity. Drought stress significantly increased abscisic acid (ABA) content. Underground parts exhibited higher initial sensitivity to drought, whereas aerial parts displayed a more sustained response; ABA levels overall showed an initial increase followed by a decline. This study expands the <i>G. uralensis</i> DREB gene database, provides a foundation for selecting stress-resistance genes, and offers insights into DREB functional roles in abiotic stress responses in this key medicinal species.

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Journal
International Journal of Molecular Sciences
Published
2025-09-22
DOI
https://doi.org/10.3390/ijms26189235
Citations
4
Primary Topic
Photosynthetic Processes and Mechanisms
Type
article
Field-Weighted Citation Impact
3.22

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article

Bioinformatics Analysis and Expression Profiling Under Abiotic Stress of the DREB Gene Family in Glycyrrhiza uralensis

Kun Zhao, Haitao Shen, Qiuling Li, Denglin Ma et al.
4 citations
International Journal of Molecular Sciences
Photosynthetic Processes and Mechanisms
3.22
article

Bioinformatics Analysis and Expression Profiling Under Abiotic Stress of the DREB Gene Family in Glycyrrhiza uralensis

Kun Zhao, Haitao Shen, Qiuling Li, Denglin Ma, Nana Shi, Xiaojing Du, Zhixiong Lin, Yaxin Zhang, Liming Cheng, Chenjie Zhao, Hua Yao, Teng Huang, Fei Wang
article en
4 citations

Abstract

<i>Glycyrrhiza uralensis</i> is an important medicinal plant exhibiting strong tolerance to abiotic stresses, including drought and salinity. DREB (Dehydration-Responsive Element-Binding) transcription factors, key members of the AP2/ERF family, play crucial roles in plant growth, development, and stress responses. Based on transcriptome data, we identified 18 DREB transcription factors in <i>G. uralensis</i>, designated <i>GuDREB1</i> to <i>GuDREB18</i>. Bioinformatics analysis revealed genomic sequences ranging from 534 to 2864 bp and coding sequence (CDS) lengths between 525 and 1509 bp. All GuDREB proteins contain a single AP2 domain, including the conserved YRG and RAYD elements, and were predicted to localize to the nucleus. Phylogenetic analysis clustered the <i>G. uralensis</i> DREBs with 61 <i>Arabidopsis thaliana</i> DREBs into five subgroups, indicating evolutionary conservation. Promoter analysis detected seventeen stress-responsive <i>cis</i>-acting elements, encompassing hormone-responsive and abiotic stress-responsive motifs, suggesting diverse biological functions. Tissue-specific expression profiling revealed <i>GuDREB</i> transcription in both aerial and underground parts. Drought stress induced varying degrees of <i>GuDREB</i> expression, confirming their involvement in stress responses. Notably, <i>GuDREB10</i> expression increased significantly in underground parts, while <i>GuDREB15</i> showed pronounced upregulation in aerial parts under drought; the <i>GuDREB15</i> promoter contained the highest number of light-responsive elements (23), potentially explaining its aerial tissue specificity. Drought stress significantly increased abscisic acid (ABA) content. Underground parts exhibited higher initial sensitivity to drought, whereas aerial parts displayed a more sustained response; ABA levels overall showed an initial increase followed by a decline. This study expands the <i>G. uralensis</i> DREB gene database, provides a foundation for selecting stress-resistance genes, and offers insights into DREB functional roles in abiotic stress responses in this key medicinal species.

International Journal of Molecular SciencesVol. 26(18)
Shihezi University (CN), Xinjiang Production and Construction Corps (CN)
National Natural Science Foundation of China, Shihezi University
Openalex Percentile: Top 8%
Photosynthetic Processes and Mechanisms
3.22
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