Simulating therapeutic combinations for lung cancer patients with heterogeneous genetic predisposition

Non-small cell lung carcinoma (NSCLC) is well-known for its high incidence (about 80% of lung cancer) and genetic heterogeneity. Personalized driver mutations such as EGFR and KRAS have established targeted therapies with kinase inhibitors, whereas immune checkpoint inhibitors (ICIs) have revolutionized immunotherapy. However, challenges such as frequent drug resistance and low response rates highlight the need for novel therapeutic strategies. Boolean network modeling is a powerful mathematical tool to simulate complex biological processes and optimize potential treatment strategies. This study developed a Boolean network model for NSCLC patients with different mutational backgrounds and evaluated the therapeutic effects by incorporating key kinase mutation inhibitors and immunological interventions. Simulations in both the Boolean network model and another quantitative model consistently suggested that the optimal therapeutic strategy involves a combination of KRAS inhibitor and ICI for KRAS-mutant patients, which is also in line with mouse model studies and the KRYSTAL-7 phase-2 clinical trial data. It would be reasonable to expect further validations from the recently announced KRYSTAL-7 phase-3 clinical trial comparing the combined therapy over pembrolizumab monotherapy in the future. Our approach highlights the value of computational modeling to evaluate and refine therapeutic strategies for precision oncology.

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Publication Details

Journal
Journal of Bioinformatics and Computational Biology
Published
2025-09-26
DOI
https://doi.org/10.1142/s0219720025500179
Primary Topic
Cancer Genomics and Diagnostics
Type
article
Field-Weighted Citation Impact
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article

Simulating therapeutic combinations for lung cancer patients with heterogeneous genetic predisposition

Zhaoyuan Fang, Md. Matiur Rahaman, Minghui Yao, Ruocheng Yu et al.
Journal of Bioinformatics and Computational Biology
Cancer Genomics and Diagnostics
article

Simulating therapeutic combinations for lung cancer patients with heterogeneous genetic predisposition

Zhaoyuan Fang, Md. Matiur Rahaman, Minghui Yao, Ruocheng Yu, L. Wu
article en

Abstract

Non-small cell lung carcinoma (NSCLC) is well-known for its high incidence (about 80% of lung cancer) and genetic heterogeneity. Personalized driver mutations such as EGFR and KRAS have established targeted therapies with kinase inhibitors, whereas immune checkpoint inhibitors (ICIs) have revolutionized immunotherapy. However, challenges such as frequent drug resistance and low response rates highlight the need for novel therapeutic strategies. Boolean network modeling is a powerful mathematical tool to simulate complex biological processes and optimize potential treatment strategies. This study developed a Boolean network model for NSCLC patients with different mutational backgrounds and evaluated the therapeutic effects by incorporating key kinase mutation inhibitors and immunological interventions. Simulations in both the Boolean network model and another quantitative model consistently suggested that the optimal therapeutic strategy involves a combination of KRAS inhibitor and ICI for KRAS-mutant patients, which is also in line with mouse model studies and the KRYSTAL-7 phase-2 clinical trial data. It would be reasonable to expect further validations from the recently announced KRYSTAL-7 phase-3 clinical trial comparing the combined therapy over pembrolizumab monotherapy in the future. Our approach highlights the value of computational modeling to evaluate and refine therapeutic strategies for precision oncology.

Journal of Bioinformatics and Computational BiologyVol. 23(5)
Ministry of Education of the People's Republic of China (CN), Gopalganj Science and Technology University (BD), Zhejiang Yongning Pharma (China) (CN), Second Affiliated Hospital of Zhejiang University (CN), Zhejiang University-University of Edinburgh Institute (CN), University of Edinburgh (GB)
Openalex Percentile: Top 68%
Cancer Genomics and Diagnostics
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