Computational Exploration of Small Hydrocarbon Networks: A Stochastic Generation and DFT Refinement Framework
Small hydrocarbons are central to astrochemistry due to their prevalence and chemical reactivity across diverse interstellar environments. Here, we present HydroMol, an open-access computational platform designed for systematic exploration and analysis of hydrocarbon chemical spaces, featuring over 2700 neutral <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"> <mml:semantics> <mml:mrow> <mml:msub><mml:mrow><mml:mtext>C</mml:mtext></mml:mrow> <mml:mrow><mml:mi>n</mml:mi></mml:mrow> </mml:msub> <mml:msub><mml:mrow><mml:mtext>H</mml:mtext></mml:mrow> <mml:mrow><mml:mi>m</mml:mi></mml:mrow> </mml:msub> <mml:mo>(</mml:mo> <mml:mi>n</mml:mi> <mml:mo>,</mml:mo> <mml:mi>m</mml:mi> <mml:mo>=</mml:mo> <mml:mn>1</mml:mn> <mml:mo>-</mml:mo> <mml:mn>10</mml:mn> <mml:mo>)</mml:mo></mml:mrow> <mml:annotation>$$ {\mathrm{C}}_n{\mathrm{H}}_m\left(n,m=1-10\right) $$</mml:annotation></mml:semantics> </mml:math> hydrocarbon structures generated stochastically and refined via density functional theory at B3LYP-D3BJ/def2-SVP level. HydroMol provides detailed molecular geometries, thermodynamic parameters, and electronic properties critical for interpreting astrochemical phenomena and identifying promising observational targets. Our database, hosted within a lightweight client-side web application for rapid search and visualization, introduces approximately 2000 previously unreported hydrocarbons absent in major chemical repositories such as PubChem. Statistical analysis highlights the predominance of structurally simple monocyclic and bicyclic species, characterized by HOMO and LUMO energies centered at approximately <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"> <mml:semantics><mml:mrow><mml:mo>-</mml:mo> <mml:mn>6</mml:mn></mml:mrow> <mml:annotation>$$ -6 $$</mml:annotation></mml:semantics> </mml:math> and <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"> <mml:semantics><mml:mrow><mml:mo>-</mml:mo> <mml:mn>2</mml:mn></mml:mrow> <mml:annotation>$$ -2 $$</mml:annotation></mml:semantics> </mml:math> eV, respectively, and typical HOMO-LUMO gaps around 4-5 eV. The methodology is readily extendable to heavier elements and expanded property datasets, providing a valuable resource for astrochemical modeling, molecular spectroscopy, and computational hydrocarbon discovery. The HydroMol web application is freely accessible at https://hydromol.github.io.
Authors
- Anakuthil Anoop (ORCID: https://orcid.org/0000-0002-8116-5506)
- Tarun Kumar Roy (ORCID: https://orcid.org/0000-0003-3181-7067)
- Subhas Ghosal (ORCID: https://orcid.org/0000-0002-9107-6080)
- Sayon Satpati (ORCID: https://orcid.org/0000-0001-8683-4126)
- Sandip Giri (ORCID: https://orcid.org/0000-0001-9015-5441)
Institutions
- Indian Institute of Technology Kharagpur (IN)
- National Institute of Technology Durgapur (IN)
- University of Kerala (IN)
- Digital Science (United States) (US)
Publication Details
- Journal
- Journal of Computational Chemistry
- Published
- 2025-09-27
- DOI
- https://doi.org/10.1002/jcc.70236
- Primary Topic
- Advanced Chemical Physics Studies
- Type
- article
- Field-Weighted Citation Impact
- 0.00