Early lifespan prediction in <i>Caenorhabditis elegans</i> via contrastive learning and channel attention
Early lifespan prediction in <i>Caenorhabditis</i> <i>elegans</i> faces the challenges of indistinct discriminative signals, subtle and localized key features, difficulty in data annotation, and poor generalization. We propose Contrastive Learning-guided Channel Attention Modulation (CLCAM), in which supervised contrastive learning clusters individuals with the same lifespan and separates different classes. The resulting embedding drives channel-wise gains that are additively coupled to the backbone, thereby amplifying subtle morphological cues. At inference, the contrastive branch is removed, keeping FLOPs essentially unchanged with a modest runtime cost on our hardware. On a public dataset, CLCAM achieves an AUC-ROC of 0.84, showing a consistent improvement over the EfficientNet-B3 baseline (0.82) and a substantial gain over the prior WormNet model (0.61). Grad-CAM indicates attention focused on the pharynx and body-wall musculature, supporting the biological plausibility of the model's decisions. CLCAM offers a clear, low-overhead paradigm for early lifespan phenotyping. CLCAM code is available at https://github.com/JMM502/CLCAM/tree/master/clcam.
Authors
- Weiyang Chen (ORCID: https://orcid.org/0000-0001-8430-7381)
- Miaomiao Jin (ORCID: https://orcid.org/0000-0003-0312-4028)
- Yi Pan (ORCID: https://orcid.org/0000-0002-2766-3096)
Institutions
- Shenzhen University (CN)
- Qufu Normal University (CN)
- Shenzhen Institutes of Advanced Technology (CN)
- Shenzhen Technology University (CN)
Publication Details
- Journal
- Journal of Bioinformatics and Computational Biology
- Published
- 2025-09-27
- DOI
- https://doi.org/10.1142/s0219720025500167
- Primary Topic
- Genetics, Aging, and Longevity in Model Organisms
- Type
- article
- Field-Weighted Citation Impact
- 0.00