GRUMB: a genome-resolved metagenomic framework for monitoring urban microbiomes and diagnosing pathogen risk
GRUMB is freely available under the MIT License at: https://github.com/SuleimanAminu/genome-resolved-urban-microbiome-biosurveillance; Zenodo DOI: https://doi.org/10.5281/zenodo.15505402. Requirements: Linux (Ubuntu 20.04+), Python 3.11, R 4.2+, SLURM. Issues and feature requests are tracked on GitHub.
Authors
- Suleiman Aminu (ORCID: https://orcid.org/0000-0002-6520-8596)
- Rachid Daoud
- AbdulAziz Ascandari
- Rachid Benhida
Institutions
- Ahmadu Bello University (NG)
- Institut de Chimie de Nice (FR)
- Université Mohammed VI Polytechnique (MA)
Publication Details
- Journal
- Bioinformatics
- Published
- 2025-09-25
- DOI
- https://doi.org/10.1093/bioinformatics/btaf548
- Citations
- 2
- Primary Topic
- Gut microbiota and health
- Type
- article
- Field-Weighted Citation Impact
- 1.61
Funders
- Université Mohammed VI Polytechnique