Dual Transcriptional Repression of Oncogenic <i>c-KIT</i> and <i>KRAS</i> by G4-Targeting Triazolyl-Indole Scaffolds Induces Synthetic Lethality in Leukemia Cells

In this study, we report the design and synthesis of a triazolyl-indole derivative, <b>TI12</b>, which induces synthetic lethality in K562 leukemia cells by preferentially targeting G-quadruplexes (G4s) in the promoter regions of <i>c-KIT1</i> and <i>KRAS</i>. Among a series of synthesized triazolyl-indole derivatives, <b>TI12</b> exhibits submicromolar affinity for these G4s, as confirmed by biophysical assays along with molecular docking and simulations. Biological studies demonstrate that <b>TI12</b> represses <i>c-KIT</i> and <i>KRAS</i> transcription, leading to G1-phase cell cycle arrest, ROS-mediated DNA damage, and apoptosis. Notably, <b>TI12</b> does not affect cells overexpressing either <i>c-KIT</i> or <i>KRAS</i>, suggesting that its cytotoxicity arises from the simultaneous suppression of both oncogenes. <i>In vivo</i> studies depicted the potential antitumor efficacy of <b>TI12</b> with minimal systemic toxicity. This study highlights the potential of G4-targeting ligands as synthetic lethal agents, offering a novel strategy for disrupting cooperative oncogenic pathways in leukemia.

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Journal
Journal of Medicinal Chemistry
Published
2025-09-25
DOI
https://doi.org/10.1021/acs.jmedchem.5c00736
Primary Topic
DNA and Nucleic Acid Chemistry
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article
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article

Dual Transcriptional Repression of Oncogenic c-KIT and KRAS by G4-Targeting Triazolyl-Indole Scaffolds Induces Synthetic Lethality in Leukemia Cells

S. C. Pal, Jyotirmayee Dash, T. Bhattacharyya, Sayantan Pradhan
Journal of Medicinal Chemistry
DNA and Nucleic Acid Chemistry
article

Dual Transcriptional Repression of Oncogenic c-KIT and KRAS by G4-Targeting Triazolyl-Indole Scaffolds Induces Synthetic Lethality in Leukemia Cells

S. C. Pal, Jyotirmayee Dash, T. Bhattacharyya, Sayantan Pradhan
article en

Abstract

In this study, we report the design and synthesis of a triazolyl-indole derivative, <b>TI12</b>, which induces synthetic lethality in K562 leukemia cells by preferentially targeting G-quadruplexes (G4s) in the promoter regions of <i>c-KIT1</i> and <i>KRAS</i>. Among a series of synthesized triazolyl-indole derivatives, <b>TI12</b> exhibits submicromolar affinity for these G4s, as confirmed by biophysical assays along with molecular docking and simulations. Biological studies demonstrate that <b>TI12</b> represses <i>c-KIT</i> and <i>KRAS</i> transcription, leading to G1-phase cell cycle arrest, ROS-mediated DNA damage, and apoptosis. Notably, <b>TI12</b> does not affect cells overexpressing either <i>c-KIT</i> or <i>KRAS</i>, suggesting that its cytotoxicity arises from the simultaneous suppression of both oncogenes. <i>In vivo</i> studies depicted the potential antitumor efficacy of <b>TI12</b> with minimal systemic toxicity. This study highlights the potential of G4-targeting ligands as synthetic lethal agents, offering a novel strategy for disrupting cooperative oncogenic pathways in leukemia.

Journal of Medicinal ChemistryVol. 68(19)
Indian Association for the Cultivation of Science (IN)
Openalex Percentile: Top 77%
DNA and Nucleic Acid Chemistry
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Dual Transcriptional Repression of Oncogenic <i>c-KIT</i> and <i>KRAS</i> by G4-Targeting Triazolyl-Indole Scaffolds Induces Synthetic Lethality in Leukemia Cells — S. C. Pal, Jyotirmayee Dash, et al. · Journal of Medicinal Chemistry (2025) | TGRS Research Map | TGRS