Multi-omics analysis of parthanatos related molecular subgroup and prognostic model development in stomach adenocarcinoma

Stomach adenocarcinoma (STAD), the most prevalent histological subtype of gastric cancer, exhibits high heterogeneity and poor prognosis, posing significant therapeutic challenges. Parthanatos, a distinct form of regulated cell death mediated by poly (ADP-ribose) polymerase-1 (PARP-1), has been implicated in tumor biology and therapeutic resistance; however, the role of parthanatos-associated genes (PRGs) in STAD remains largely unexplored. In this study, we performed a comprehensive multi-omics analysis integrating transcriptomic, genomic, and clinical data from public databases to delineate the molecular landscape of PRGs in STAD. Unsupervised clustering revealed distinct PRG-related molecular subtypes with significant differences in clinical outcomes, immune infiltration profiles, and biological pathway activation. Based on machine learning algorithms, we established and validated a novel PRG-based prognostic signature, which demonstrated robust predictive performance. Moreover, single-cell RNA sequencing and in vitro functional assays were conducted to explore cellular heterogeneity and gene function. Notably, in vitro experiments, including western blot, colony formation, CCK-8, and Transwell assays, confirmed that one key PRG, COL8A1, promotes STAD cell proliferation and migration. Collectively, our findings highlight the clinical and biological significance of PRGs in STAD, offering novel biomarkers and potential therapeutic targets for STAD precision treatment.

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Publication Details

Journal
PLoS ONE
Published
2025-09-26
DOI
https://doi.org/10.1371/journal.pone.0332988
Citations
1
Primary Topic
Gastric Cancer Management and Outcomes
Type
article
Field-Weighted Citation Impact
1.52
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article

Multi-omics analysis of parthanatos related molecular subgroup and prognostic model development in stomach adenocarcinoma

Xiangxin Wu, Tianyi Xia, Yanping Liu, Bowen Wang et al.
1 citations
PLoS ONE
Gastric Cancer Management and Outcomes
1.52
article

Multi-omics analysis of parthanatos related molecular subgroup and prognostic model development in stomach adenocarcinoma

Xiangxin Wu, Tianyi Xia, Yanping Liu, Bowen Wang, Zhenhua Liu, Lianming Cai
article en
1 citations

Abstract

Stomach adenocarcinoma (STAD), the most prevalent histological subtype of gastric cancer, exhibits high heterogeneity and poor prognosis, posing significant therapeutic challenges. Parthanatos, a distinct form of regulated cell death mediated by poly (ADP-ribose) polymerase-1 (PARP-1), has been implicated in tumor biology and therapeutic resistance; however, the role of parthanatos-associated genes (PRGs) in STAD remains largely unexplored. In this study, we performed a comprehensive multi-omics analysis integrating transcriptomic, genomic, and clinical data from public databases to delineate the molecular landscape of PRGs in STAD. Unsupervised clustering revealed distinct PRG-related molecular subtypes with significant differences in clinical outcomes, immune infiltration profiles, and biological pathway activation. Based on machine learning algorithms, we established and validated a novel PRG-based prognostic signature, which demonstrated robust predictive performance. Moreover, single-cell RNA sequencing and in vitro functional assays were conducted to explore cellular heterogeneity and gene function. Notably, in vitro experiments, including western blot, colony formation, CCK-8, and Transwell assays, confirmed that one key PRG, COL8A1, promotes STAD cell proliferation and migration. Collectively, our findings highlight the clinical and biological significance of PRGs in STAD, offering novel biomarkers and potential therapeutic targets for STAD precision treatment.

PLoS ONEVol. 20(9)
Harbin Medical University (CN), Ganzhou People's Hospital (CN), Third Affiliated Hospital of Harbin Medical University (CN)
Openalex Percentile: Top 14%
Gastric Cancer Management and Outcomes
1.52
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Multi-omics analysis of parthanatos related molecular subgroup and prognostic model development in stomach adenocarcinoma — Xiangxin Wu, Tianyi Xia, et al. · PLoS ONE (2025) | TGRS Research Map | TGRS