A Generalized Machine-Learning Framework for Developing Alchemical Many-Body Interaction Models for Polymer-Grafted Nanoparticles
Polymer-grafted nanoparticles (PGNs) serve as highly customizable building blocks for technologically relevant self-assembled nanomaterials. Physics-informed inverse design strategies are crucial for expediting exploration of the massive associated design space by identifying optimal PGN attributes, such as polymer length and grafting density, to meet a target self-assembled structure. However, their success hinges on an accurate description of how PGN interactions vary as a function of both particle positions and physical attributes. We introduce a framework to meet this need. Specifically, we develop an "alchemical" machine-learned interatomic model (ML-IAM) that describes how PGN interactions vary as a function of both inter-PGN distances <i>and</i> tunable PGN attributes, simultaneously. This model is an extension of the physics-informed and explicitly many-bodied ChIMES ML-IAM. The resulting extended ChIMES (X-ChIMES) ML-IAM is trained on potential of mean force (PMF) data for PGNs with varied polymer ligand lengths. We enable efficient training data generation by combining the forward-reverse steered molecular dynamics enhanced sampling approach with a grid-sampling scheme in the HOOMD-blue software package. We demonstrate the efficacy of ChIMES for generating coarse-grained (CG) models for PGNs with fixed design attributes, development of X-ChIMES, and its application for enhancing digital alchemy inverse-design simulations using HOOMD-blue and the ChIMES Calculator. This is the first application of ChIMES in modeling CG systems and coupling with an inverse design method to target nanomaterial self-assembly.
Authors
- Rebecca Lindsey (ORCID: https://orcid.org/0000-0002-3438-9064)
- Sharon C. Glotzer (ORCID: https://orcid.org/0000-0002-7197-0085)
- Shih-Kuang Lee (ORCID: https://orcid.org/0009-0002-4677-336X)
- Yiyuan Zhang (ORCID: https://orcid.org/0000-0001-9788-9958)
Institutions
- University of Michigan (US)
- BioSurfaces (United States) (US)
- Michigan State University (US)
Publication Details
- Journal
- Journal of Chemical Theory and Computation
- Published
- 2025-09-26
- DOI
- https://doi.org/10.1021/acs.jctc.5c00901
- Primary Topic
- Machine Learning in Materials Science
- Type
- article
- Field-Weighted Citation Impact
- 0.00