The Findable, Accessible, Interoperable, Reusable (FAIR) Lite Principles to ensure utility of computational toxicology models

A broad range of computational models are available for animal-free chemical safety assessment. The models are used to predict a variety of endpoints, including adverse effects or apical endpoints, toxicokinetic properties and exposure, often from chemical structure or in vitro inputs alone. To support their wider use, such models need to be Findable, Accessible, Interoperable, Reusable (FAIR). This study has reevaluated the existing FAIR principles applied to quantitative structure-activity relationships (QSARs) in order to adapt these principles to a wider range of computational models. Despite the breadth and variety of approaches, many computational models comprise common components including the training series, information about the modelling engine and the model itself. As a result, a refined set of four FAIR Lite principles is proposed based on the methodological foundations of computational toxicology which are unambiguously understood by practitioners such as developers and end-users. To this end, it is proposed that to comply with the original , a computational toxicology model should be associated with (i) a globally unique identifier for model citation; (ii) the capture and curation of the model; (iii) the metadata for the dependent and independent variables and, where possible, data; and (iv) storage in a searchable and interoperable platform. The FAIR Lite principles are mapped onto the original FAIR principles applied to QSARs, thereby demonstrating that a simpler checklist approach covers all aspects.

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Publication Details

Journal
ALTEX
Published
2025-01-01
DOI
https://doi.org/10.14573/altex.2502021
Citations
3
Primary Topic
Pesticide Residue Analysis and Safety
Type
article
Field-Weighted Citation Impact
3.49

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article

The Findable, Accessible, Interoperable, Reusable (FAIR) Lite Principles to ensure utility of computational toxicology models

Samuel J. Belfield, Eva Bay Wedebye, Sulev Sild, Anish Gomatam et al.
3 citations
ALTEX
Pesticide Residue Analysis and Safety
3.49
article

The Findable, Accessible, Interoperable, Reusable (FAIR) Lite Principles to ensure utility of computational toxicology models

Samuel J. Belfield, Eva Bay Wedebye, Sulev Sild, Anish Gomatam, James W. Firman, Aljŏs̆a Smajíć, Hassan Basiri, Swapnil Chavan, Uko Maran, Nikolai Georgiev Nikolov, Geven Piir, M Cronin, Judith C. Madden, Manuel Pastor, Paul L. A. Popelier, Nicoleta Sp̂înu, Steven J. Enoch, Palle Steen Helmke, Barry Hardy, Georgios Chrysochoou, Erich March-Vila
article en
3 citations

Abstract

A broad range of computational models are available for animal-free chemical safety assessment. The models are used to predict a variety of endpoints, including adverse effects or apical endpoints, toxicokinetic properties and exposure, often from chemical structure or in vitro inputs alone. To support their wider use, such models need to be Findable, Accessible, Interoperable, Reusable (FAIR). This study has reevaluated the existing FAIR principles applied to quantitative structure-activity relationships (QSARs) in order to adapt these principles to a wider range of computational models. Despite the breadth and variety of approaches, many computational models comprise common components including the training series, information about the modelling engine and the model itself. As a result, a refined set of four FAIR Lite principles is proposed based on the methodological foundations of computational toxicology which are unambiguously understood by practitioners such as developers and end-users. To this end, it is proposed that to comply with the original , a computational toxicology model should be associated with (i) a globally unique identifier for model citation; (ii) the capture and curation of the model; (iii) the metadata for the dependent and independent variables and, where possible, data; and (iv) storage in a searchable and interoperable platform. The FAIR Lite principles are mapped onto the original FAIR principles applied to QSARs, thereby demonstrating that a simpler checklist approach covers all aspects.

ALTEX
University of Vienna (AT), Universitat Pompeu Fabra (ES), RISE Research Institutes of Sweden (SE), University of Manchester (GB), Edelweiss Connect (Switzerland) (CH), University of Tartu (EE), Liverpool John Moores University (GB), Technical University of Denmark (DK)
European Commission, Eesti Teadusagentuur, HORIZON EUROPE Framework Programme
Openalex Percentile: Top 7%
Pesticide Residue Analysis and Safety
3.49
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