Interactions of imidazole with water molecules

The investigation started by generating initial configurations through global optimizations using classical potential energy. Then, a suitable functional of density functional theory (DFT) is selected between 20 functionals, including dispersion corrections, by benchmarking to the DLPNO-CCSD(T1)/CBS. The M06L-D3 functional is found to be the most accurate. The structures of the imidazole-water clusters, <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"><mml:mrow><mml:mtext>IMZ</mml:mtext> <mml:msub><mml:mrow><mml:mo>(</mml:mo> <mml:msub><mml:mtext>H</mml:mtext> <mml:mn>2</mml:mn></mml:msub> <mml:mtext>O</mml:mtext> <mml:mo>)</mml:mo></mml:mrow> <mml:mi>n</mml:mi></mml:msub> </mml:mrow> </mml:math> , <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"><mml:mrow><mml:mi>n</mml:mi> <mml:mo>=</mml:mo> <mml:mn>1</mml:mn> <mml:mo>-</mml:mo> <mml:mn>12</mml:mn> <mml:mo>,</mml:mo> <mml:mspace></mml:mspace> <mml:mn>64</mml:mn></mml:mrow> </mml:math> , are then optimized at the M06L-D3/def2-TZVPP level of theory. Hydration free energy and enthalpy are estimated using the cluster continuum solvation model. Calculations are performed using Gaussian 16 and ORCA suite of programs. Quantum theory of atoms in molecules (QTAIM) is performed using the AIMAll program.

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Publication Details

Journal
Journal of Molecular Modeling
Published
2025-09-25
DOI
https://doi.org/10.1007/s00894-025-06515-4
Primary Topic
Advanced Chemical Physics Studies
Type
article
Field-Weighted Citation Impact
0.00

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article

Interactions of imidazole with water molecules

Jeanet Conradie, Alhadji Malloum
Journal of Molecular Modeling
Advanced Chemical Physics Studies
article

Interactions of imidazole with water molecules

Jeanet Conradie, Alhadji Malloum
article en

Abstract

The investigation started by generating initial configurations through global optimizations using classical potential energy. Then, a suitable functional of density functional theory (DFT) is selected between 20 functionals, including dispersion corrections, by benchmarking to the DLPNO-CCSD(T1)/CBS. The M06L-D3 functional is found to be the most accurate. The structures of the imidazole-water clusters, <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"><mml:mrow><mml:mtext>IMZ</mml:mtext> <mml:msub><mml:mrow><mml:mo>(</mml:mo> <mml:msub><mml:mtext>H</mml:mtext> <mml:mn>2</mml:mn></mml:msub> <mml:mtext>O</mml:mtext> <mml:mo>)</mml:mo></mml:mrow> <mml:mi>n</mml:mi></mml:msub> </mml:mrow> </mml:math> , <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"><mml:mrow><mml:mi>n</mml:mi> <mml:mo>=</mml:mo> <mml:mn>1</mml:mn> <mml:mo>-</mml:mo> <mml:mn>12</mml:mn> <mml:mo>,</mml:mo> <mml:mspace></mml:mspace> <mml:mn>64</mml:mn></mml:mrow> </mml:math> , are then optimized at the M06L-D3/def2-TZVPP level of theory. Hydration free energy and enthalpy are estimated using the cluster continuum solvation model. Calculations are performed using Gaussian 16 and ORCA suite of programs. Quantum theory of atoms in molecules (QTAIM) is performed using the AIMAll program.

Journal of Molecular ModelingVol. 31(10)
University of Maroua (CM), University of the Free State (ZA)
Center for High Performance Computing
Openalex Percentile: Top 79%
Advanced Chemical Physics Studies
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