Simulation of Fish Acute Toxicity of Pharmaceuticals Using Simplified Molecular Input Line Entry System (SMILES) Notation as a Representation of Molecular Structure

The practice of using optimal descriptors has been applied for more than twenty years to develop in silico models. In the present study, a series of in silico models was built to predict the acute fish toxicity of pharmaceuticals using optimal descriptors. The SMILES format was used to represent the chemical structure. The data were split into five training and validation sets. The obtained model for fish toxicity yielded a determination coefficient of 0.67 for the external validation set, representing an acceptable quality, considering the complexity of the pharmaceuticals given their molecular structure and specific biological activity. This study is useful for assessing the acute fish toxicity of pharmaceuticals and, in general terms, as an approach to building models for complex biological endpoints.

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Journal
International Journal of Molecular Sciences
Published
2025-09-24
DOI
https://doi.org/10.3390/ijms26199348
Primary Topic
Computational Drug Discovery Methods
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article
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article

Simulation of Fish Acute Toxicity of Pharmaceuticals Using Simplified Molecular Input Line Entry System (SMILES) Notation as a Representation of Molecular Structure

Andrey Andreevich Toropov, Emilio Benfenati, Anna Lombardo, Alessandra Roncaglioni et al.
International Journal of Molecular Sciences
Computational Drug Discovery Methods
article

Simulation of Fish Acute Toxicity of Pharmaceuticals Using Simplified Molecular Input Line Entry System (SMILES) Notation as a Representation of Molecular Structure

Andrey Andreevich Toropov, Emilio Benfenati, Anna Lombardo, Alessandra Roncaglioni, Alla P. Toropova, Edoardo Luca Viganò, Erika Colombo
article en

Abstract

The practice of using optimal descriptors has been applied for more than twenty years to develop in silico models. In the present study, a series of in silico models was built to predict the acute fish toxicity of pharmaceuticals using optimal descriptors. The SMILES format was used to represent the chemical structure. The data were split into five training and validation sets. The obtained model for fish toxicity yielded a determination coefficient of 0.67 for the external validation set, representing an acceptable quality, considering the complexity of the pharmaceuticals given their molecular structure and specific biological activity. This study is useful for assessing the acute fish toxicity of pharmaceuticals and, in general terms, as an approach to building models for complex biological endpoints.

International Journal of Molecular SciencesVol. 26(19)
Mario Negri Institute for Pharmacological Research (IT)
Openalex Percentile: Top 72%
Computational Drug Discovery Methods
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Simulation of Fish Acute Toxicity of Pharmaceuticals Using Simplified Molecular Input Line Entry System (SMILES) Notation as a Representation of Molecular Structure — Andrey Andreevich Toropov, Emilio Benfenati, et al. · International Journal of Molecular Sciences (2025) | TGRS Research Map | TGRS