Simulation of Fish Acute Toxicity of Pharmaceuticals Using Simplified Molecular Input Line Entry System (SMILES) Notation as a Representation of Molecular Structure
The practice of using optimal descriptors has been applied for more than twenty years to develop in silico models. In the present study, a series of in silico models was built to predict the acute fish toxicity of pharmaceuticals using optimal descriptors. The SMILES format was used to represent the chemical structure. The data were split into five training and validation sets. The obtained model for fish toxicity yielded a determination coefficient of 0.67 for the external validation set, representing an acceptable quality, considering the complexity of the pharmaceuticals given their molecular structure and specific biological activity. This study is useful for assessing the acute fish toxicity of pharmaceuticals and, in general terms, as an approach to building models for complex biological endpoints.
Authors
- Andrey Andreevich Toropov (ORCID: https://orcid.org/0000-0001-6864-6340)
- Emilio Benfenati (ORCID: https://orcid.org/0000-0002-3976-5989)
- Anna Lombardo (ORCID: https://orcid.org/0000-0002-8364-4797)
- Alessandra Roncaglioni (ORCID: https://orcid.org/0000-0002-1734-0939)
- Alla P. Toropova (ORCID: https://orcid.org/0000-0002-4194-9963)
- Edoardo Luca Viganò (ORCID: https://orcid.org/0000-0001-8971-8606)
- Erika Colombo (ORCID: https://orcid.org/0000-0002-2310-1352)
Institutions
- Mario Negri Institute for Pharmacological Research (IT)
Publication Details
- Journal
- International Journal of Molecular Sciences
- Published
- 2025-09-24
- DOI
- https://doi.org/10.3390/ijms26199348
- Primary Topic
- Computational Drug Discovery Methods
- Type
- article
- Field-Weighted Citation Impact
- 0.00