Fast and Fourier features for transfer learning of interatomic potentials

Training machine learning interatomic potentials that are both computationally and data-efficient is a key challenge for enabling their routine use in atomistic simulations. To this effect, we introduce franken, a scalable and lightweight transfer learning framework that extracts atomic descriptors from pre-trained graph neural networks and transfers them to new systems using random Fourier features - an efficient and scalable approximation of kernel methods. It also provides a closed-form fine-tuning strategy for general-purpose potentials such as MACE-MP0, enabling fast and accurate adaptation to new systems or levels of quantum mechanical theory with minimal hyperparameter tuning. On a benchmark dataset of 27 transition metals, franken outperforms optimized kernel-based methods in both training time and accuracy, reducing model training from tens of hours to minutes on a single GPU. We further demonstrate the framework's strong data-efficiency by training stable and accurate potentials for bulk water and the Pt(111)/water interface using just tens of training structures. Our open-source implementation (https://franken.readthedocs.io) offers a fast and practical solution for training potentials and deploying them for molecular dynamics simulations across diverse systems.

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Publication Details

Journal
npj Computational Materials
Published
2025-09-25
DOI
https://doi.org/10.1038/s41524-025-01779-z
Citations
8
Primary Topic
Machine Learning in Materials Science
Type
article
Field-Weighted Citation Impact
4.14

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article

Fast and Fourier features for transfer learning of interatomic potentials

Giacomo Meanti, Michele Parrinello, Massimiliano Pontil, Pietro Novelli et al.
8 citations
npj Computational Materials
Machine Learning in Materials Science
4.14
article

Fast and Fourier features for transfer learning of interatomic potentials

Giacomo Meanti, Michele Parrinello, Massimiliano Pontil, Pietro Novelli, Lorenzo Rosasco, Pedro J. Buigues, Leo Hermann Bonati
article en
8 citations

Abstract

Training machine learning interatomic potentials that are both computationally and data-efficient is a key challenge for enabling their routine use in atomistic simulations. To this effect, we introduce franken, a scalable and lightweight transfer learning framework that extracts atomic descriptors from pre-trained graph neural networks and transfers them to new systems using random Fourier features - an efficient and scalable approximation of kernel methods. It also provides a closed-form fine-tuning strategy for general-purpose potentials such as MACE-MP0, enabling fast and accurate adaptation to new systems or levels of quantum mechanical theory with minimal hyperparameter tuning. On a benchmark dataset of 27 transition metals, franken outperforms optimized kernel-based methods in both training time and accuracy, reducing model training from tens of hours to minutes on a single GPU. We further demonstrate the framework's strong data-efficiency by training stable and accurate potentials for bulk water and the Pt(111)/water interface using just tens of training structures. Our open-source implementation (https://franken.readthedocs.io) offers a fast and practical solution for training potentials and deploying them for molecular dynamics simulations across diverse systems.

npj Computational MaterialsVol. 11(1)
Italian Institute of Technology (IT), Centre Inria de l'Université Grenoble Alpes (FR), Intelligent Machines (Sweden) (SE), University College London (GB), University of Genoa (IT), Université Grenoble Alpes (FR)
European Commission, Ministero dell’Istruzione, dell’Università e della Ricerca, Istituto Italiano di Tecnologia, HORIZON EUROPE Framework Programme
Openalex Percentile: Top 5%
Machine Learning in Materials Science
4.14
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