Development of Fish Metabolome Database: Expanding Access and Advancing Management of Metabolite Data Resources

This study designs the Fish Metabolome Database (FMDB) as a repository of fish metabolite data. The data is valuable for fisheries research, such as fishery product safety, water pollution, and fish interactions with the environment. The database was designed with the requirements generated from previous research related to metabolite data management and adapted to the datasets. The Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) strengthened by benchmark at the synthesis stage are used to gather the requirements. The proposed data fields and features have been implemented in a prototype database containing 91 datasets of fish metabolites. Its simple functionality makes it easy to search for databases on species keywords or metabolite names. The limited amount of data is a research limitation that will continue to be developed to improve the database. However, as there is currently no existing database in that field, FMDB becomes a foundation for managing fish metabolite data that is useful for further research and education in the field of fisheries. This research also provides insight for professionals and practitioners in database management with requirements based on literature reviews.

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Publication Details

Journal
Turkish Journal of Fisheries and Aquatic Sciences
Published
2025-08-28
DOI
https://doi.org/10.4194/trjfas26139
Primary Topic
Metabolomics and Mass Spectrometry Studies
Type
article
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article

Development of Fish Metabolome Database: Expanding Access and Advancing Management of Metabolite Data Resources

Lia Sadita, Harry Budi Santoso, Giri Rohmad Barokah, Ira Maryati et al.
Turkish Journal of Fisheries and Aquatic Sciences
Metabolomics and Mass Spectrometry Studies
article

Development of Fish Metabolome Database: Expanding Access and Advancing Management of Metabolite Data Resources

Lia Sadita, Harry Budi Santoso, Giri Rohmad Barokah, Ira Maryati, Anne Parlina, Andre Sihombing
article en

Abstract

This study designs the Fish Metabolome Database (FMDB) as a repository of fish metabolite data. The data is valuable for fisheries research, such as fishery product safety, water pollution, and fish interactions with the environment. The database was designed with the requirements generated from previous research related to metabolite data management and adapted to the datasets. The Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) strengthened by benchmark at the synthesis stage are used to gather the requirements. The proposed data fields and features have been implemented in a prototype database containing 91 datasets of fish metabolites. Its simple functionality makes it easy to search for databases on species keywords or metabolite names. The limited amount of data is a research limitation that will continue to be developed to improve the database. However, as there is currently no existing database in that field, FMDB becomes a foundation for managing fish metabolite data that is useful for further research and education in the field of fisheries. This research also provides insight for professionals and practitioners in database management with requirements based on literature reviews.

Turkish Journal of Fisheries and Aquatic SciencesVol. 26(3)
University of Indonesia (ID), National Nuclear Energy Agency of Indonesia (ID), National Research and Innovation Agency (ID)
Openalex Percentile: Top 77%
Metabolomics and Mass Spectrometry Studies
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Development of Fish Metabolome Database: Expanding Access and Advancing Management of Metabolite Data Resources — Lia Sadita, Harry Budi Santoso, et al. · Turkish Journal of Fisheries and Aquatic Sciences (2025) | TGRS Research Map | TGRS