Advanced deep learning approaches for the accurate classification of Phallaceae fungi with explainable AI

In this study, deep learning (DL)-based models were developed for the classification of 5 fungal species from the Phallaceae family (Clathrus ruber, Colus hirudinosus, Mutinus caninus, Phallus impudicus, and Pseudocolus fusiformis). ConvNeXT achieved the highest performance with 98% accuracy, 98% precision, 98% recall, and 98% F1-score. EfficientNetB4 and Xception also performed well with 96% accuracy. In contrast, lighter models such as MobileNetV2 and MixNet S showed significantly lower accuracy (84% and 80%, respectively). Among the explainable artificial intelligence (XAI) techniques, gradient-weighted class activation mapping (Grad-CAM) and Integrated Gradients showed that high-accuracy models focus more effectively on biologically meaningful regions. In particular, the ConvNeXT plus Grad-CAM combination consistently highlighted critical structural areas, such as the cap and stalk of fungi, resulting in more accurate classifications. These findings show that DL-based models offer high accuracy in classifying fungal species with complex morphological features. Furthermore, XAI techniques play a critical role in enhancing classification processes.

Authors

Publication Details

Journal
TURKISH JOURNAL OF BOTANY
Published
2025-09-19
DOI
https://doi.org/10.55730/1300-008x.2871
Citations
3
Primary Topic
Plant Pathogens and Fungal Diseases
Type
article
Field-Weighted Citation Impact
3.45
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article

Advanced deep learning approaches for the accurate classification of Phallaceae fungi with explainable AI

Fatih Ekinci, Mehmet Serdar Güzel, İlgaz Akata, Koray Açıcı et al.
3 citations
TURKISH JOURNAL OF BOTANY
Plant Pathogens and Fungal Diseases
3.45
article

Advanced deep learning approaches for the accurate classification of Phallaceae fungi with explainable AI

Fatih Ekinci, Mehmet Serdar Güzel, İlgaz Akata, Koray Açıcı, Eda Kumru, Ömer Burak Altındal
article en
3 citations

Abstract

In this study, deep learning (DL)-based models were developed for the classification of 5 fungal species from the Phallaceae family (Clathrus ruber, Colus hirudinosus, Mutinus caninus, Phallus impudicus, and Pseudocolus fusiformis). ConvNeXT achieved the highest performance with 98% accuracy, 98% precision, 98% recall, and 98% F1-score. EfficientNetB4 and Xception also performed well with 96% accuracy. In contrast, lighter models such as MobileNetV2 and MixNet S showed significantly lower accuracy (84% and 80%, respectively). Among the explainable artificial intelligence (XAI) techniques, gradient-weighted class activation mapping (Grad-CAM) and Integrated Gradients showed that high-accuracy models focus more effectively on biologically meaningful regions. In particular, the ConvNeXT plus Grad-CAM combination consistently highlighted critical structural areas, such as the cap and stalk of fungi, resulting in more accurate classifications. These findings show that DL-based models offer high accuracy in classifying fungal species with complex morphological features. Furthermore, XAI techniques play a critical role in enhancing classification processes.

TURKISH JOURNAL OF BOTANYVol. 49(5)
Openalex Percentile: Top 7%
Plant Pathogens and Fungal Diseases
3.45
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