Machine learning and data-driven inverse modeling of metabolomics unveil key processes of active aging

Physical inactivity and low fitness have become global health concerns. Metabolomics, as an integrative approach, may link fitness to molecular changes. In this study, we analyzed blood metabolomes from elderly individuals under different treatments. By defining two fitness groups and their corresponding metabolite profiles, we applied several machine learning classifiers to identify key metabolite biomarkers. Aspartate consistently emerged as a dominant fitness marker. We further defined a body activity index (BAI) and analyzed two cohorts with high and low BAI using COVRECON, a novel method for metabolic network interaction analysis. COVRECON identifies causal molecular dynamics in multiomics data. Aspartate-amino-transferase (AST) was among the dominant processes distinguishing the groups. Routine blood tests confirmed significant differences in AST and ALT. Aspartate is also a known biomarker in dementia, related to physical fitness. In summary, we combine machine learning and COVRECON to identify metabolic biomarkers and molecular dynamics supporting active aging.

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Publication Details

Journal
npj Systems Biology and Applications
Published
2025-09-24
DOI
https://doi.org/10.1038/s41540-025-00580-4
Primary Topic
Metabolomics and Mass Spectrometry Studies
Type
article
Field-Weighted Citation Impact
0.00

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article

Machine learning and data-driven inverse modeling of metabolomics unveil key processes of active aging

Barbara Wessner, Jiahang Li, Steffen Waldherr, B. Franzke et al.
npj Systems Biology and Applications
Metabolomics and Mass Spectrometry Studies
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Machine learning and data-driven inverse modeling of metabolomics unveil key processes of active aging

Barbara Wessner, Jiahang Li, Steffen Waldherr, B. Franzke, Wolfram Weckwerth, Eva-Maria Strasser, Iro Pierides, Karl‐Heinz Wagner, Martin Brenner
article en

Abstract

Physical inactivity and low fitness have become global health concerns. Metabolomics, as an integrative approach, may link fitness to molecular changes. In this study, we analyzed blood metabolomes from elderly individuals under different treatments. By defining two fitness groups and their corresponding metabolite profiles, we applied several machine learning classifiers to identify key metabolite biomarkers. Aspartate consistently emerged as a dominant fitness marker. We further defined a body activity index (BAI) and analyzed two cohorts with high and low BAI using COVRECON, a novel method for metabolic network interaction analysis. COVRECON identifies causal molecular dynamics in multiomics data. Aspartate-amino-transferase (AST) was among the dominant processes distinguishing the groups. Routine blood tests confirmed significant differences in AST and ALT. Aspartate is also a known biomarker in dementia, related to physical fitness. In summary, we combine machine learning and COVRECON to identify metabolic biomarkers and molecular dynamics supporting active aging.

npj Systems Biology and ApplicationsVol. 11(1)
University of Vienna (AT), Nankai University (CN), Hochschule Campus Wien (AT), Pädagogische Hochschule Wien (AT), Medical University of Vienna (AT)
National Natural Science Foundation of China, Universität Wien, China Scholarship Council, Tianjin Municipal Science and Technology Bureau
Openalex Percentile: Top 77%
Metabolomics and Mass Spectrometry Studies
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