Atlantool: a command line tool to retrieve DNA and RNA sequencing reads from BAM files by the read identifier
Precompiled Atlantool executables are freely available for download from https://github.com/VCCRI/atlantool/releases for Linux, macOS, and Windows platforms, as is a Java JAR file that permits Atlantool to run in a Java environment. The source code and user documentation are available at https://github.com/VCCRI/atlantool/.
Authors
- Eleni Giannoulatou (ORCID: https://orcid.org/0000-0002-7084-6736)
- Robert Stöcker
- Sally L. Dunwoodie (ORCID: https://orcid.org/0000-0002-2069-7349)
- Huy T. Le
- Alex Yakovlev (ORCID: https://orcid.org/0000-0003-0826-9330)
- Gillian M. Blue (ORCID: https://orcid.org/0000-0002-1480-9535)
- Edwin Philip Kirk (ORCID: https://orcid.org/0000-0002-4662-0024)
- Emma M. Rath (ORCID: https://orcid.org/0000-0002-8430-5236)
- Gary F. Sholler (ORCID: https://orcid.org/0000-0003-1501-8898)
- Natasha Nassar (ORCID: https://orcid.org/0000-0002-3720-9655)
- Gavin Chapman (ORCID: https://orcid.org/0000-0002-3513-723X)
- Samantha J. Lain (ORCID: https://orcid.org/0000-0002-8988-7407)
- Yukhym Pyshnohraiev
- Amitdev Ranjitdev
Institutions
- Northwestern University (US)
- Lurie Children's Hospital (US)
- The University of Sydney (AU)
- Victor Chang Cardiac Research Institute (AU)
- UNSW Sydney (AU)
- St Vincent's Clinic (AU)
- Lurie Children's Hospital (US)
- Sydney Institute of Marine Science (AU)
Publication Details
- Journal
- Bioinformatics Advances
- Published
- 2024-12-26
- DOI
- https://doi.org/10.1093/bioadv/vbaf226
- Primary Topic
- Environmental DNA in Biodiversity Studies
- Type
- article
- Field-Weighted Citation Impact
- 0.00
Funders
- Victor Chang Cardiac Research Institute
- National Computational Infrastructure
- Children’s Hospital of Wisconsin Research Institute
- Murdoch Children's Research Institute
- NSW Ministry of Health
- Medical Research Council
- National Health and Medical Research Council
- National Cancer Institute