Fine-Tuning Methods for Large Language Models in Clinical Medicine by Supervised Fine-Tuning and Direct Preference Optimization: Comparative Evaluation
SFT alone is sufficient for simple tasks such as rule-based text classification, while DPO after SFT improves performance on the more complex tasks of triage, clinical reasoning, and summarization. We postulate that SFT alone is sufficient for simple tasks because SFT strengthens simple word-association reasoning, whereas DPO enables deeper comprehension because it is trained with both positive and negative examples, enabling the model to recognize more complex patterns. Ultimately, our results help inform clinical informaticists when to deploy either fine-tuning method and encourage commercial LLM providers to offer DPO fine-tuning for commonly used proprietary LLMs in medicine.
Authors
- P. Stephen (ORCID: https://orcid.org/0000-0003-3738-9569)
- Ekanath Rangan (ORCID: https://orcid.org/0000-0001-5168-3508)
- Jonathan H. Chen (ORCID: https://orcid.org/0000-0002-4387-8740)
- Iván López
- Abdessalem Boukil
- Vishwesh Patel (ORCID: https://orcid.org/0009-0001-0522-9512)
- Thomas Savage (ORCID: https://orcid.org/0000-0003-4828-5802)
Institutions
- Palo Alto University (US)
- Hospital of the University of Pennsylvania (US)
- Stanford Medicine (US)
- Saint Michael's Medical Center (US)
- University of Pennsylvania (US)
- University of Sousse (TN)
Publication Details
- Journal
- Journal of Medical Internet Research
- Published
- 2025-09-23
- DOI
- https://doi.org/10.2196/76048
- Citations
- 2
- Primary Topic
- Artificial Intelligence in Healthcare and Education
- Type
- article
- Field-Weighted Citation Impact
- 1.31