Super-resolution imaging with nanopipettes

Uncovering structural information of biological systems at the nanoscale is vital for understanding their dynamics and function. Nanoscale imaging techniques that obtain structural information down to the single-molecule level under physiologically relevant conditions and without affecting the fragile structure of biomaterials are limited. Thus, the realization of such techniques is highly attractive, especially within the biological sciences. Nanopipette-based imaging using scanning ion conductance microscopy (SICM) fulfills these requirements, but resolution limitations and artefact formation hinder obtaining accurate structural information on the scale comparable to the pipette tip. Here, we present a novel technique, super-resolution SICM (SR-SICM), based on image deconvolution using simulated pipette point-spread functions. The technique is demonstrated on different types of nanostructures, where it surpasses the lateral resolution limit of SICM and mitigates imaging artefacts considerably. SR-SICM is applicable to any SICM dataset through user-friendly downloadable software promoting the possibility of single-molecule studies on a routine basis.

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Publication Details

Journal
npj Imaging
Published
2025-09-22
DOI
https://doi.org/10.1038/s44303-025-00108-9
Citations
2
Primary Topic
Force Microscopy Techniques and Applications
Type
article
Field-Weighted Citation Impact
2.49

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article

Super-resolution imaging with nanopipettes

Lasse Hyldgaard Klausen, Steffan Møller Sønderskov, Sebastian Amland Skaanvik, Xiaojun Han et al.
2 citations
npj Imaging
Force Microscopy Techniques and Applications
2.49
article

Super-resolution imaging with nanopipettes

Lasse Hyldgaard Klausen, Steffan Møller Sønderskov, Sebastian Amland Skaanvik, Xiaojun Han, Mingdong Dong
article en
2 citations

Abstract

Uncovering structural information of biological systems at the nanoscale is vital for understanding their dynamics and function. Nanoscale imaging techniques that obtain structural information down to the single-molecule level under physiologically relevant conditions and without affecting the fragile structure of biomaterials are limited. Thus, the realization of such techniques is highly attractive, especially within the biological sciences. Nanopipette-based imaging using scanning ion conductance microscopy (SICM) fulfills these requirements, but resolution limitations and artefact formation hinder obtaining accurate structural information on the scale comparable to the pipette tip. Here, we present a novel technique, super-resolution SICM (SR-SICM), based on image deconvolution using simulated pipette point-spread functions. The technique is demonstrated on different types of nanostructures, where it surpasses the lateral resolution limit of SICM and mitigates imaging artefacts considerably. SR-SICM is applicable to any SICM dataset through user-friendly downloadable software promoting the possibility of single-molecule studies on a routine basis.

npj ImagingVol. 3(1)
Western University (CA), Aarhus University (DK), Harbin Institute of Technology (CN), ETH Zurich (CH), Instituto Nacional de Metrologia, Qualidade e Tecnologia (BR), Institute for Biomedical Engineering (CH), BioElectronics (United States) (US)
Villum Fonden, National Natural Science Foundation of China, Eberhard Karls Universität Tübingen, Aarhus Universitets Forskningsfond, Sino-Danish Center, Horizon 2020 Framework Programme, HORIZON EUROPE Framework Programme
Openalex Percentile: Top 10%
Force Microscopy Techniques and Applications
2.49
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