Enzymatic Properties and Structural Insights Into the Derhamnosylating Alkaline α‐<scp>l</scp>‐Rhamnosidase From <i>Aspergillus flavus</i>

α-l-Rhamnosidases are ubiquitous enzymes responsible for derhamnosylation of α-l-rhamnose moiety from a variety of glycoconjugates and numerous natural glycosides. An α-l-rhamnosidase-secreting fungal strain was isolated from soil sample. Further, it was identified as Aspergillus flavus through internal transcribed spacer (ITS) gene sequencing. The enzyme was purified to homogeneity using ion-exchange and gel filtration chromatography and exhibited molecular weight of 71 ± 1 kDa. The maximum catalytic efficiency for the α-l-rhamnosidase was established to be pH 10.0 and at a temperature of 50°C. The purified enzyme exhibits a K<sub>m</sub> 0.41 ± 0.06 mM and a V<sub>max</sub> 2.43 ± 0.17 µmol/min/mg for naringin hydrolysis. In this study, we modeled the 3D structure of A. flavus α-l-rhamnosidase using SWISS Model and validated it via PDBsum and PROCHECK. Molecular docking of A. flavus α-l-rhamnosidase with naringin and p-nitrophenyl-α-l-rhamnopyranoside (pNPR) identified key binding interactions. Electrostatic surface analysis highlighted ligand-binding sites, revealing crucial residues for substrate recognition and enzyme stability. Active site residues of A. flavus α-l-rhamnosidase forming hydrogen bonds and hydrophobic interactions with naringin and pNPR were identified, providing insights into substrate specificity and its potential applications in glycoside hydrolysis.

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Journal
Biotechnology and Applied Biochemistry
Published
2025-09-21
DOI
https://doi.org/10.1002/bab.70053
Primary Topic
Phytochemical compounds biological activities
Type
article
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article

Enzymatic Properties and Structural Insights Into the Derhamnosylating Alkaline α‐l‐Rhamnosidase From Aspergillus flavus

Vinita Yadav, Donald R. Senger, Pramod Kumar Yadav, Soumen Barman et al.
Biotechnology and Applied Biochemistry
Phytochemical compounds biological activities
article

Enzymatic Properties and Structural Insights Into the Derhamnosylating Alkaline α‐l‐Rhamnosidase From Aspergillus flavus

Vinita Yadav, Donald R. Senger, Pramod Kumar Yadav, Soumen Barman, Kunwar Vishal
article en

Abstract

α-l-Rhamnosidases are ubiquitous enzymes responsible for derhamnosylation of α-l-rhamnose moiety from a variety of glycoconjugates and numerous natural glycosides. An α-l-rhamnosidase-secreting fungal strain was isolated from soil sample. Further, it was identified as Aspergillus flavus through internal transcribed spacer (ITS) gene sequencing. The enzyme was purified to homogeneity using ion-exchange and gel filtration chromatography and exhibited molecular weight of 71 ± 1 kDa. The maximum catalytic efficiency for the α-l-rhamnosidase was established to be pH 10.0 and at a temperature of 50°C. The purified enzyme exhibits a K<sub>m</sub> 0.41 ± 0.06 mM and a V<sub>max</sub> 2.43 ± 0.17 µmol/min/mg for naringin hydrolysis. In this study, we modeled the 3D structure of A. flavus α-l-rhamnosidase using SWISS Model and validated it via PDBsum and PROCHECK. Molecular docking of A. flavus α-l-rhamnosidase with naringin and p-nitrophenyl-α-l-rhamnopyranoside (pNPR) identified key binding interactions. Electrostatic surface analysis highlighted ligand-binding sites, revealing crucial residues for substrate recognition and enzyme stability. Active site residues of A. flavus α-l-rhamnosidase forming hydrogen bonds and hydrophobic interactions with naringin and pNPR were identified, providing insights into substrate specificity and its potential applications in glycoside hydrolysis.

Biotechnology and Applied Biochemistry
Indian Institute of Science Education and Research Kolkata (IN), Chhatrapati Shahu Ji Maharaj University (IN)
Openalex Percentile: Top 77%
Phytochemical compounds biological activities
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