Differentiation latency and dormancy signatures define fetal liver hematopoietic stem cells at single-cell resolution
Decoding the mechanisms governing the self-renewal of hematopoietic stem cells (HSCs) during their expansion in the fetal liver (FL) could unlock novel therapeutic strategies to expand transplantable HSCs, a long-standing challenge. To explore intrinsic and extrinsic regulation of FL-HSC self-renewal at single-cell resolution, we engineered a culture platform replicating the FL endothelial niche that supports the amplification of serially engraftable HSCs. Leveraging this platform together with single-cell index flow cytometry, live imaging, transplantation assays, and single-cell RNA sequencing, we demonstrate that differentiation latency, cell-division symmetry, and transcriptional signatures of biosynthetic dormancy are distinguishing properties of rare FL-HSCs capable of serial multilineage hematopoietic reconstitution. Our findings support a paradigm in which intrinsic programs and niche-derived signals together facilitate the symmetric self-renewal of FL-HSCs while delaying their active participation in hematopoiesis. Our study also provides a resource for future investigations into intrinsic and extrinsic signaling pathways governing FL-HSC self-renewal.
Authors
- Cynthia Nourigat-Mckay
- Hui Zhao (ORCID: https://orcid.org/0000-0001-7747-2100)
- Kimberly A. Aldinger (ORCID: https://orcid.org/0000-0002-5406-8911)
- Dana L. Jackson (ORCID: https://orcid.org/0000-0002-6917-0580)
- Cole Trapnell (ORCID: https://orcid.org/0000-0002-8105-4347)
- Stacey Dozono
- Colleen Delaney (ORCID: https://orcid.org/0000-0002-1044-2801)
- Katie Kraskouskas
- Adam Heck (ORCID: https://orcid.org/0000-0002-2485-759X)
- Takashi Ishida (ORCID: https://orcid.org/0000-0002-1060-0777)
- Irwin D. Bernstein (ORCID: https://orcid.org/0000-0003-0795-3392)
- Ian G. Phelps
- Rachel Wellington (ORCID: https://orcid.org/0000-0001-5559-1010)
- Brandon Hadland (ORCID: https://orcid.org/0000-0003-3999-9002)
- Barbara Varnum‐Finney
- Olivia G. Waltner (ORCID: https://orcid.org/0000-0001-7021-0431)
- Shahin Rafii (ORCID: https://orcid.org/0000-0001-5605-1067)
- Juliane I Mercoli
Institutions
- University of Washington (US)
- Cornell University (US)
- Fred Hutch Cancer Center (US)
- Weill Cornell Medicine (US)
Publication Details
- Journal
- Cell Reports
- Published
- 2025-09-23
- DOI
- https://doi.org/10.1016/j.celrep.2025.116289
- Citations
- 1
- Primary Topic
- Hematopoietic Stem Cell Transplantation
- Type
- article
- Field-Weighted Citation Impact
- 1.77