Adoption of a “Pathogenic, Predisposing, Risk and Benign” classification of DNA variants for precision medicine – a step forward

Precision medicine is often at odds with medical genetics in classifying gene mutations that have high impact on protein expression or function but do not “cause” disease. A new proposal aims to expand the terminology for genetic variants along a spectrum: (1) pathogenic (retaining Medical Genetics meaning) (2) predisposing (new term) (3) risk (as used in PRS) (4) benign (used in contrast to “pathogenic” but may be “predisposing” in some circumstances and context) This framework bridges the gap between binary classifications and the nuanced reality of variant effects, paving the way for more accurate risk assessment in clinical practice. It is time for adoption by geneticists and major professional societies.

Authors

Publication Details

Journal
SMART-MD journal of precision medicine.
Published
2025-09-19
DOI
https://doi.org/10.69734/h7x6zm57
Citations
1
Primary Topic
Genomics and Rare Diseases
Type
article
Field-Weighted Citation Impact
1.82
Controls
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article

Adoption of a “Pathogenic, Predisposing, Risk and Benign” classification of DNA variants for precision medicine – a step forward

David C. Whitcomb
1 citations
SMART-MD journal of precision medicine.
Genomics and Rare Diseases
1.82
article

Adoption of a “Pathogenic, Predisposing, Risk and Benign” classification of DNA variants for precision medicine – a step forward

David C. Whitcomb
article en
1 citations

Abstract

Precision medicine is often at odds with medical genetics in classifying gene mutations that have high impact on protein expression or function but do not “cause” disease. A new proposal aims to expand the terminology for genetic variants along a spectrum: (1) pathogenic (retaining Medical Genetics meaning) (2) predisposing (new term) (3) risk (as used in PRS) (4) benign (used in contrast to “pathogenic” but may be “predisposing” in some circumstances and context) This framework bridges the gap between binary classifications and the nuanced reality of variant effects, paving the way for more accurate risk assessment in clinical practice. It is time for adoption by geneticists and major professional societies.

SMART-MD journal of precision medicine.Vol. 2(3)
Openalex Percentile: Top 12%
Genomics and Rare Diseases
1.82
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Adoption of a “Pathogenic, Predisposing, Risk and Benign” classification of DNA variants for precision medicine – a step forward — David C. Whitcomb · SMART-MD journal of precision medicine. (2025) | TGRS Research Map | TGRS