<i>Rhizosolenia</i> mat diatoms associate with nitrogen-fixing microbes

Some <i>Rhizosolenia</i> diatoms living in oligotrophic marine ecosystems are known to form large, conspicuous mats and are thought to be sources of new nitrogen to surface waters via vertical migration to the nitracline where subsurface nitrate is accessed for growth. These vertically migrating <i>Rhizosolenia</i> mats are chronically under sampled, and both the diatom species comprising the mats and the associated microbiome have not been characterized using modern molecular techniques. Here we present the first DNA-based analysis of <i>Rhizosolenia</i> mats collected in the North Pacific Subtropical Gyre. Using sequencing of 18S rRNA and <i>nifH</i> genes (a proxy for N<sub>2</sub> fixation capacity), we report on the molecular diversity of mat-forming <i>Rhizosolenia</i> species, which include two newly sequenced clades, and an assemblage of associated N<sub>2</sub>-fixing microorganisms that is distinct from the non-mat associated water column assemblage. Our findings advance knowledge of oligotrophic diatom diversity and challenge prevailing views of their nitrogen sources, suggesting these mats may obtain nitrogen through association-based N<sub>2</sub> fixation. Further work is needed to understand the nature of these associations, and whether <i>Rhizosolenia</i> mat communities are a significant unrecognized source of N<sub>2</sub>-fixation-derived new nitrogen to the oligotrophic surface waters.

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Publication Details

Journal
ISME Communications
Published
2025-01-01
DOI
https://doi.org/10.1093/ismeco/ycaf159
Primary Topic
Diatoms and Algae Research
Type
article
Field-Weighted Citation Impact
0.00

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article

Rhizosolenia mat diatoms associate with nitrogen-fixing microbes

Mar Benavides, Matthew M. Mills, Kendra A. Turk‐Kubo, Sarah R. Smith
ISME Communications
Diatoms and Algae Research
article

Rhizosolenia mat diatoms associate with nitrogen-fixing microbes

Mar Benavides, Matthew M. Mills, Kendra A. Turk‐Kubo, Sarah R. Smith
article en

Abstract

Some <i>Rhizosolenia</i> diatoms living in oligotrophic marine ecosystems are known to form large, conspicuous mats and are thought to be sources of new nitrogen to surface waters via vertical migration to the nitracline where subsurface nitrate is accessed for growth. These vertically migrating <i>Rhizosolenia</i> mats are chronically under sampled, and both the diatom species comprising the mats and the associated microbiome have not been characterized using modern molecular techniques. Here we present the first DNA-based analysis of <i>Rhizosolenia</i> mats collected in the North Pacific Subtropical Gyre. Using sequencing of 18S rRNA and <i>nifH</i> genes (a proxy for N<sub>2</sub> fixation capacity), we report on the molecular diversity of mat-forming <i>Rhizosolenia</i> species, which include two newly sequenced clades, and an assemblage of associated N<sub>2</sub>-fixing microorganisms that is distinct from the non-mat associated water column assemblage. Our findings advance knowledge of oligotrophic diatom diversity and challenge prevailing views of their nitrogen sources, suggesting these mats may obtain nitrogen through association-based N<sub>2</sub> fixation. Further work is needed to understand the nature of these associations, and whether <i>Rhizosolenia</i> mat communities are a significant unrecognized source of N<sub>2</sub>-fixation-derived new nitrogen to the oligotrophic surface waters.

ISME CommunicationsVol. 5(1)
J. Craig Venter Institute (US), Université de Toulon (FR), University of California, Santa Cruz (US), National Oceanography Centre (GB), Living Systems (United States) (US), Moss Landing Marine Laboratories (US), Stanford University (US)
University of Illinois at Urbana-Champaign, University of Illinois at Chicago
Openalex Percentile: Top 84%
Diatoms and Algae Research
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