Draft Genome Sequence of <i>Phytophthora abietivora</i> , a Root Rot Pathogen of True Firs in Managed Plantations
Phytophthora abietivora is a recently described root rot pathogen of true firs ( Abies spp.) and a major contributor to fir plantation decline in eastern North America. We present a 62.17-Mbp draft genome assembly of P. abietivora generated using Oxford Nanopore and Illumina sequencing technologies. The assembly comprises 2,917 scaffolds with an N50 of 43.8 kb, 99.7% completeness, and 15,906 predicted protein-coding genes, including 1,210 secreted proteins. Single-nucleotide polymorphism analysis revealed extended runs of homozygosity and allele frequency shifts, suggesting dynamic extreme aneuploidy. This reference genome will serve as a critical resource for exploring the evolution and pathogenicity of P. abietivora and developing control strategies. [Formula: see text] Copyright © 2026 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license .
Authors
- Guillaume Charron (ORCID: https://orcid.org/0000-0001-5971-3337)
- Nicolas Feau (ORCID: https://orcid.org/0000-0001-5925-9867)
- Philippe Tanguay (ORCID: https://orcid.org/0000-0002-6247-0521)
- Isabella Laughton
Institutions
- Canadian Forest Service (CA)
- Natural Resources Canada (CA)
- Canadian Sport Centre Pacific (CA)
Publication Details
- Journal
- PhytoFrontiers™
- Published
- 2025-09-19
- DOI
- https://doi.org/10.1094/phytofr-09-25-0096-a
- Primary Topic
- Plant Pathogens and Resistance
- Type
- article
- Field-Weighted Citation Impact
- 0.00