Expanding and refining the Mammalian Phenotype Ontology to enhance disease model discovery

The mouse is a premier model system for investigating gene function and modeling human disease. For almost 40 years, Mouse Genome Informatics has worked to capture and integrate the data generated from mouse studies. A critical component of this integration is the development and use of the Mammalian Phenotype (MP) Ontology to capture the morphological and physiological effects of alterations to gene function in the mouse. As the wealth of phenotype data captured using the MP has expanded, its utility in the diagnosis of human disease has increased. Tools have been developed to use mouse and human phenotypes in variant identification. To enhance the applicability of the MP in disease diagnosis and increase the ability of researchers to find models for specific research questions, we have undertaken a disease-focused expansion of the MP. In addition, we have worked to improve the alignment of the MP to the Human Phenotype Ontology to make automated translation between mouse and human phenotypes easier and more reliable.

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Publication Details

Journal
Disease Models & Mechanisms
Published
2025-09-18
DOI
https://doi.org/10.1242/dmm.052385
Citations
2
Primary Topic
Biomedical Text Mining and Ontologies
Type
article
Field-Weighted Citation Impact
1.61

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article

Expanding and refining the Mammalian Phenotype Ontology to enhance disease model discovery

Nicolas Matentzoglu, Susan M. Bello, Cynthia L. Smith, Leigh Carmody et al.
2 citations
Disease Models & Mechanisms
Biomedical Text Mining and Ontologies
1.61
article

Expanding and refining the Mammalian Phenotype Ontology to enhance disease model discovery

Nicolas Matentzoglu, Susan M. Bello, Cynthia L. Smith, Leigh Carmody, Anna V. Anagnostopoulos
article en
2 citations

Abstract

The mouse is a premier model system for investigating gene function and modeling human disease. For almost 40 years, Mouse Genome Informatics has worked to capture and integrate the data generated from mouse studies. A critical component of this integration is the development and use of the Mammalian Phenotype (MP) Ontology to capture the morphological and physiological effects of alterations to gene function in the mouse. As the wealth of phenotype data captured using the MP has expanded, its utility in the diagnosis of human disease has increased. Tools have been developed to use mouse and human phenotypes in variant identification. To enhance the applicability of the MP in disease diagnosis and increase the ability of researchers to find models for specific research questions, we have undertaken a disease-focused expansion of the MP. In addition, we have worked to improve the alignment of the MP to the Human Phenotype Ontology to make automated translation between mouse and human phenotypes easier and more reliable.

Disease Models & MechanismsVol. 18(10)
Senologic Hellenic Society (GR), Jackson Laboratory (US), Semantic Designs (United States) (US)
National Institutes of Health, National Human Genome Research Institute
Openalex Percentile: Top 15%
Biomedical Text Mining and Ontologies
1.61
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