Targeted NAT10 Degradation by PROTAC NP1192 Suppresses Hypoxia-Adaptive Glycolysis and Reinvigorates CD8 <sup>+</sup> Effector T-Cell Function for Synergistic Cancer Immunotherapy

Tumor resistance to immune checkpoint blockade (ICB) therapy is frequently driven by adaptive metabolic reprogramming in the hypoxic tumor microenvironment (TME). The key N4-acetylcytidine (ac4C) RNA modification mediator N-acetyltransferase 10 (NAT10) emerges as a promising therapeutic target, despite the lack of potent targeting agents. Here, we engineered NP1192, a PROTAC degrader targeting NAT10. NP1192 achieved nearly 70% NAT10 degradation and a 26.8% lower IC<sub>50</sub> than canonical NAT10 inhibitor Remodelin in cervical cancer cells, outperforming Remodelin in antitumor effect <i>in vivo</i>, <i>in vitro</i>, and across three tumor organoids. It abrogated ac4C modifications on <i>HIF1A</i> mRNA and translation, reducing hypoxic lactate production and depleted ATP, and suppressed HIF-1α-mediated PD-L1 upregulation. In xenograft models, NP1192 combined with anti-PD-L1 inhibited subcutaneous xenograft growth and reduced tumor-core lactate gradients by > 80%. Furthermore, scRNA-seq and <i>in vitro</i> coculture experiments identified expansion of IFN-γ<sup>+</sup> effector CD8<sup>+</sup> T cells (T<sub>eff</sub>) and decline in exhausted CD8<sup>+</sup> T cells (T<sub>ex</sub>). NP1192 in combination with anti-PD-L1 enhanced proliferation and effector function of CD8<sup>+</sup> T<sub>eff</sub> cells, thereby reversing resistance to anti-PD-L1 blockade therapy and synergizing with immunotherapy. These findings establish PROTAC-mediated NAT10 degradation as a dual metabolic-immune strategy to enhance checkpoint blockade efficacy.

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Journal
ACS Central Science
Published
2025-09-16
DOI
https://doi.org/10.1021/acscentsci.5c00812
Primary Topic
Protein Degradation and Inhibitors
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article
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article

Targeted NAT10 Degradation by PROTAC NP1192 Suppresses Hypoxia-Adaptive Glycolysis and Reinvigorates CD8 + Effector T-Cell Function for Synergistic Cancer Immunotherapy

Zhiqiang Sun, Shaoyan Gan, Chenglong Xu, Yi Hao et al.
ACS Central Science
Protein Degradation and Inhibitors
article

Targeted NAT10 Degradation by PROTAC NP1192 Suppresses Hypoxia-Adaptive Glycolysis and Reinvigorates CD8 + Effector T-Cell Function for Synergistic Cancer Immunotherapy

Zhiqiang Sun, Shaoyan Gan, Chenglong Xu, Yi Hao, Xia Guo, Keyi Ao, Xin Li, Li Li, Jian Zhang, Jianjun Chen, Xiuli Wen, Xiaona Chen, J. J. Qin, Zichao Yang
article en

Abstract

Tumor resistance to immune checkpoint blockade (ICB) therapy is frequently driven by adaptive metabolic reprogramming in the hypoxic tumor microenvironment (TME). The key N4-acetylcytidine (ac4C) RNA modification mediator N-acetyltransferase 10 (NAT10) emerges as a promising therapeutic target, despite the lack of potent targeting agents. Here, we engineered NP1192, a PROTAC degrader targeting NAT10. NP1192 achieved nearly 70% NAT10 degradation and a 26.8% lower IC<sub>50</sub> than canonical NAT10 inhibitor Remodelin in cervical cancer cells, outperforming Remodelin in antitumor effect <i>in vivo</i>, <i>in vitro</i>, and across three tumor organoids. It abrogated ac4C modifications on <i>HIF1A</i> mRNA and translation, reducing hypoxic lactate production and depleted ATP, and suppressed HIF-1α-mediated PD-L1 upregulation. In xenograft models, NP1192 combined with anti-PD-L1 inhibited subcutaneous xenograft growth and reduced tumor-core lactate gradients by > 80%. Furthermore, scRNA-seq and <i>in vitro</i> coculture experiments identified expansion of IFN-γ<sup>+</sup> effector CD8<sup>+</sup> T cells (T<sub>eff</sub>) and decline in exhausted CD8<sup>+</sup> T cells (T<sub>ex</sub>). NP1192 in combination with anti-PD-L1 enhanced proliferation and effector function of CD8<sup>+</sup> T<sub>eff</sub> cells, thereby reversing resistance to anti-PD-L1 blockade therapy and synergizing with immunotherapy. These findings establish PROTAC-mediated NAT10 degradation as a dual metabolic-immune strategy to enhance checkpoint blockade efficacy.

ACS Central ScienceVol. 11(11)
Shenzhen University (CN), Southern University of Science and Technology (CN), First People's Hospital of Foshan (CN), Jewish Home (US), Southern Medical University Shenzhen Hospital (CN), Korean Society of Medical Ultrasound (KR), Shenzhen Baoan High School Group (CN), Shenzhen Pingle Orthopedic Hospital (CN), Southern Medical University (CN)
Openalex Percentile: Top 78%
Protein Degradation and Inhibitors
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