Integrating Single-Cell Transcriptomic Data of Metastatic Gastric Cancer to Construct a Tumor-Associated Neutrophil Signature and Clinical Validation in MSS/pMMR Patients

<b>Background:</b> Single-cell sequencing technology has emerged as a powerful tool for investigating the tumor immune microenvironment, enabling a deeper understanding of the heterogeneity of immune cell populations within tumors. Tumor-associated neutrophils (TANs) have become a focal point in the study of the tumor immune microenvironment due to their involvement in tumorigenesis, progression, and drug resistance. <b>Methods:</b> We analyzed scRNA-seq data from metastatic gastric cancer (GC) and bulk RNA-seq data from multiple GC cohorts. Non-negative matrix factorization (NMF) was used to classify molecular subtypes, and a prognostic model was constructed using LASSO Cox regression. Key genes were validated by using qRT-PCR and immunohistochemistry. Molecular docking was utilized to screen small-molecule compounds targeting prognostic genes. <b>Results:</b> scRNA-seq analysis identified neutrophil-associated clusters. Using neutrophil-related genes, we classified two molecular subtypes with distinct immune microenvironment features and established a six-gene prognostic risk model. Internal and external validation confirmed its robust predictive ability. The model also predicted immunotherapy response, with the low-risk group showing better outcomes, preliminarily validated in MSS/pMMR patients treated with Camrelizumab. Additionally, we assessed chemotherapy and targeted drug sensitivities and identified small-molecule compounds targeting the six prognostic genes. <b>Conclusions:</b> This study highlights the significance of TANs in predicting GC prognosis, immunotherapy response, and drug exploration, providing a foundation for personalized treatment strategies.

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Publication Details

Journal
ACS Omega
Published
2025-09-16
DOI
https://doi.org/10.1021/acsomega.5c06877
Primary Topic
Immune cells in cancer
Type
article
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article

Integrating Single-Cell Transcriptomic Data of Metastatic Gastric Cancer to Construct a Tumor-Associated Neutrophil Signature and Clinical Validation in MSS/pMMR Patients

Mengfang Liu, Jinhua Xiang, Jing Yu, Changfeng Man et al.
ACS Omega
Immune cells in cancer
article

Integrating Single-Cell Transcriptomic Data of Metastatic Gastric Cancer to Construct a Tumor-Associated Neutrophil Signature and Clinical Validation in MSS/pMMR Patients

Mengfang Liu, Jinhua Xiang, Jing Yu, Changfeng Man, Rong He, Yao Lin, Shan Wang, Yu Fan, Yimeng Sun
article en

Abstract

<b>Background:</b> Single-cell sequencing technology has emerged as a powerful tool for investigating the tumor immune microenvironment, enabling a deeper understanding of the heterogeneity of immune cell populations within tumors. Tumor-associated neutrophils (TANs) have become a focal point in the study of the tumor immune microenvironment due to their involvement in tumorigenesis, progression, and drug resistance. <b>Methods:</b> We analyzed scRNA-seq data from metastatic gastric cancer (GC) and bulk RNA-seq data from multiple GC cohorts. Non-negative matrix factorization (NMF) was used to classify molecular subtypes, and a prognostic model was constructed using LASSO Cox regression. Key genes were validated by using qRT-PCR and immunohistochemistry. Molecular docking was utilized to screen small-molecule compounds targeting prognostic genes. <b>Results:</b> scRNA-seq analysis identified neutrophil-associated clusters. Using neutrophil-related genes, we classified two molecular subtypes with distinct immune microenvironment features and established a six-gene prognostic risk model. Internal and external validation confirmed its robust predictive ability. The model also predicted immunotherapy response, with the low-risk group showing better outcomes, preliminarily validated in MSS/pMMR patients treated with Camrelizumab. Additionally, we assessed chemotherapy and targeted drug sensitivities and identified small-molecule compounds targeting the six prognostic genes. <b>Conclusions:</b> This study highlights the significance of TANs in predicting GC prognosis, immunotherapy response, and drug exploration, providing a foundation for personalized treatment strategies.

ACS OmegaVol. 10(38)
Jiangsu University (CN), Tongji University (CN), Capital University (US), Capital Medical University (CN), China-Japan Friendship Hospital (CN), Cancer Institute (WIA) (IN), Affiliated Hospital of Jiangsu University (CN), Shanghai Tenth People's Hospital (CN), Zhenjiang City Fourth People's Hospital (CN), Beijing Friendship Hospital (CN)
Openalex Percentile: Top 73%
Immune cells in cancer
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