ISMRM Open Science Initiative for Perfusion Imaging (OSIPI): Composite Python Library for ASL Image Processing

Motivation: The ISMRM-Open Science Initiative for Perfusion Imaging (OSIPI) aims to facilitate collaboration, reproducibility, and transparency in perfusion imaging research by providing a shared platform for tools and methodologies. Goal(s): To develop an open-source library of functions and scripts for Arterial Spin Labeled (ASL) imaging preprocessing and analysis. Approach: We harmonized the code collected during our first roadmap into a Python library, PyASL, supporting both human and preclinical brain data. Results: PyASL currently includes two human data pipelines, two preclinical data pipelines, a deep learning-based denoising function, and a command line utility integration. Each function is fully documented for user reference. Impact: PyASL provides unified, open-source functions that enable researchers to apply standardized methods across studies, enhancing reproducibility and transparency. It also reduces redundant development, allowing scientists to focus on addressing new challenges in ASL perfusion imaging.

Authors

Publication Details

Journal
Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition
Published
2025-09-16
DOI
https://doi.org/10.58530/2025/3692
Primary Topic
Atomic and Subatomic Physics Research
Type
article
Field-Weighted Citation Impact
0.00
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article

ISMRM Open Science Initiative for Perfusion Imaging (OSIPI): Composite Python Library for ASL Image Processing

Ben Dickie, María Clara Álvarez, Azeez Adebimpe, Yifan Shuai et al.
Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition
Atomic and Subatomic Physics Research
article

ISMRM Open Science Initiative for Perfusion Imaging (OSIPI): Composite Python Library for ASL Image Processing

Ben Dickie, María Clara Álvarez, Azeez Adebimpe, Yifan Shuai, Petra J. van Houdt, Zhiliang Wei, David D. Thomas, Jan Petr, Lucy Kershaw, Limin Zhou, Luis Torres
article en

Abstract

Motivation: The ISMRM-Open Science Initiative for Perfusion Imaging (OSIPI) aims to facilitate collaboration, reproducibility, and transparency in perfusion imaging research by providing a shared platform for tools and methodologies. Goal(s): To develop an open-source library of functions and scripts for Arterial Spin Labeled (ASL) imaging preprocessing and analysis. Approach: We harmonized the code collected during our first roadmap into a Python library, PyASL, supporting both human and preclinical brain data. Results: PyASL currently includes two human data pipelines, two preclinical data pipelines, a deep learning-based denoising function, and a command line utility integration. Each function is fully documented for user reference. Impact: PyASL provides unified, open-source functions that enable researchers to apply standardized methods across studies, enhancing reproducibility and transparency. It also reduces redundant development, allowing scientists to focus on addressing new challenges in ASL perfusion imaging.

Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition
Openalex Percentile: Top 81%
Atomic and Subatomic Physics Research
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