Comparison of mtrk, Pulseq, and vendor sequences using simulated, phantom, and in-vivo acquisitions

Motivation: Pulse-sequence development traditionally relies on proprietary and access-restricted vendor SDKs. Open-source frameworks can make pulse-sequence programming more intuitive and accessible. Goal(s): Establish mtrk as an open-source web-based tool for developing or converting custom MRI pulse sequences into a standardized format. Approach: mtrk was used to design a spin-echo sequence, which was then converted into Pulseq format. Both versions were evaluated in phantom and in vivo scans. The results were compared to images from a vendor sequence. Results: Images from the mtrk, Pulseq, and vendor sequences showed high similarity. Phantom results matched synthetic images simulated for the same sequence using KomaMRI. Impact: mtrk can improve the reproducibility, accessibility, and dissemination of pulse sequences through an intuitive development environment. Its human-readable descriptive language, its compatibility with Pulseq, and its agreement with vendor sequences make mtrk a powerful open-source tool for MRI pulse-sequence development.

Authors

Publication Details

Journal
Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition
Published
2025-09-16
DOI
https://doi.org/10.58530/2025/1279
Primary Topic
Advanced MRI Techniques and Applications
Type
article
Field-Weighted Citation Impact
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article

Comparison of mtrk, Pulseq, and vendor sequences using simulated, phantom, and in-vivo acquisitions

Kai Tobias Block, Riccardo Lattanzi, Ilias I. Giannakopoulos, Anaïs Artiges et al.
Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition
Advanced MRI Techniques and Applications
article

Comparison of mtrk, Pulseq, and vendor sequences using simulated, phantom, and in-vivo acquisitions

Kai Tobias Block, Riccardo Lattanzi, Ilias I. Giannakopoulos, Anaïs Artiges, Eros Montin, Carlos Castillo‐Passi, Amanpreet Singh Saimbhi
article en

Abstract

Motivation: Pulse-sequence development traditionally relies on proprietary and access-restricted vendor SDKs. Open-source frameworks can make pulse-sequence programming more intuitive and accessible. Goal(s): Establish mtrk as an open-source web-based tool for developing or converting custom MRI pulse sequences into a standardized format. Approach: mtrk was used to design a spin-echo sequence, which was then converted into Pulseq format. Both versions were evaluated in phantom and in vivo scans. The results were compared to images from a vendor sequence. Results: Images from the mtrk, Pulseq, and vendor sequences showed high similarity. Phantom results matched synthetic images simulated for the same sequence using KomaMRI. Impact: mtrk can improve the reproducibility, accessibility, and dissemination of pulse sequences through an intuitive development environment. Its human-readable descriptive language, its compatibility with Pulseq, and its agreement with vendor sequences make mtrk a powerful open-source tool for MRI pulse-sequence development.

Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition
Openalex Percentile: Top 65%
Advanced MRI Techniques and Applications
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Comparison of mtrk, Pulseq, and vendor sequences using simulated, phantom, and in-vivo acquisitions — Kai Tobias Block, Riccardo Lattanzi, et al. · Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition (2025) | TGRS Research Map | TGRS