Integrated Virtual Screening for Anti-Caries Compounds from Neem: Dual-Target Inhibition of Biofilm Formation and Bacterial DNA Replication
<b>Background</b>: Dental caries arise from polymicrobial biofilms and require interventions that address both local virulence and systemic burden. <b>Methods</b>: A curated set of 124 neem-derived phytochemicals was screened against <i>Streptococcus mutans</i> glucansucrase (3AIC) and <i>Staphylococcus aureus</i> DNA gyrase B (3U2D) using harmonized AutoDock Vina parameters. Ligand standardization and receptor preparation followed conventional protocols. <b>Results</b>: The most favorable docking scores reached -10.7 kcal·mol<sup>-1</sup> for 3AIC and -8.9 kcal·mol<sup>-1</sup> for 3U2D. Redocking produced pose RMSD values of 1.52 Å (3AIC) and 0.96 Å (3U2D). Per-receptor ADMET profiles for the six top-ranked compounds indicated median logP values of 4.93 (3AIC) and 4.52 (3U2D), median TPSA values of 80.3 and 62.9 Å<sup>2</sup>, median rotatable bonds of 2.5 and 1.0, and median QED values of 0.41 and 0.76, respectively. <b>Conclusions</b>: An integrated, dual-target screen prioritized neem constituents with plausible local anti-cariogenic activity and physicochemical features compatible with systemic disposition. These in silico findings motivate targeted experimental validation.
Authors
- Zainab A. Ayinla (ORCID: https://orcid.org/0000-0002-5847-8918)
- Samuel S. Agboola (ORCID: https://orcid.org/0000-0003-3971-9891)
- Babatunji Emmanuel Oyinloye (ORCID: https://orcid.org/0000-0003-2165-7936)
- Olutosin Ilesanmi
- Oluwatoyin Mary Oyinloye (ORCID: https://orcid.org/0000-0003-3886-1351)
- Olaposi Idowu Omotuyi (ORCID: https://orcid.org/0000-0002-5473-745X)
- Oluranti E. Olaiya
- Oluwaseun E. Agboola (ORCID: https://orcid.org/0000-0002-6794-4749)
- Olajumoke Tolulope Idowu (ORCID: https://orcid.org/0000-0003-1915-0677)
- Omotola M Fajana
Institutions
- University of Zululand (ZA)
- Ekiti State University (NG)
- University of Waterloo (CA)
- Afe Babalola University (NG)
- Babcock University (NG)
- Achievers University (NG)
Publication Details
- Journal
- Biomedicines
- Published
- 2025-09-08
- DOI
- https://doi.org/10.3390/biomedicines13092202
- Citations
- 1
- Primary Topic
- Biochemical Analysis and Sensing Techniques
- Type
- article
- Field-Weighted Citation Impact
- 1.12
Funders
- University of Zululand