Integrated Virtual Screening for Anti-Caries Compounds from Neem: Dual-Target Inhibition of Biofilm Formation and Bacterial DNA Replication

<b>Background</b>: Dental caries arise from polymicrobial biofilms and require interventions that address both local virulence and systemic burden. <b>Methods</b>: A curated set of 124 neem-derived phytochemicals was screened against <i>Streptococcus mutans</i> glucansucrase (3AIC) and <i>Staphylococcus aureus</i> DNA gyrase B (3U2D) using harmonized AutoDock Vina parameters. Ligand standardization and receptor preparation followed conventional protocols. <b>Results</b>: The most favorable docking scores reached -10.7 kcal·mol<sup>-1</sup> for 3AIC and -8.9 kcal·mol<sup>-1</sup> for 3U2D. Redocking produced pose RMSD values of 1.52 Å (3AIC) and 0.96 Å (3U2D). Per-receptor ADMET profiles for the six top-ranked compounds indicated median logP values of 4.93 (3AIC) and 4.52 (3U2D), median TPSA values of 80.3 and 62.9 Å<sup>2</sup>, median rotatable bonds of 2.5 and 1.0, and median QED values of 0.41 and 0.76, respectively. <b>Conclusions</b>: An integrated, dual-target screen prioritized neem constituents with plausible local anti-cariogenic activity and physicochemical features compatible with systemic disposition. These in silico findings motivate targeted experimental validation.

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Publication Details

Journal
Biomedicines
Published
2025-09-08
DOI
https://doi.org/10.3390/biomedicines13092202
Citations
1
Primary Topic
Biochemical Analysis and Sensing Techniques
Type
article
Field-Weighted Citation Impact
1.12

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article

Integrated Virtual Screening for Anti-Caries Compounds from Neem: Dual-Target Inhibition of Biofilm Formation and Bacterial DNA Replication

Zainab A. Ayinla, Samuel S. Agboola, Babatunji Emmanuel Oyinloye, Olutosin Ilesanmi et al.
1 citations
Biomedicines
Biochemical Analysis and Sensing Techniques
1.12
article

Integrated Virtual Screening for Anti-Caries Compounds from Neem: Dual-Target Inhibition of Biofilm Formation and Bacterial DNA Replication

Zainab A. Ayinla, Samuel S. Agboola, Babatunji Emmanuel Oyinloye, Olutosin Ilesanmi, Oluwatoyin Mary Oyinloye, Olaposi Idowu Omotuyi, Oluranti E. Olaiya, Oluwaseun E. Agboola, Olajumoke Tolulope Idowu, Omotola M Fajana
article en
1 citations

Abstract

<b>Background</b>: Dental caries arise from polymicrobial biofilms and require interventions that address both local virulence and systemic burden. <b>Methods</b>: A curated set of 124 neem-derived phytochemicals was screened against <i>Streptococcus mutans</i> glucansucrase (3AIC) and <i>Staphylococcus aureus</i> DNA gyrase B (3U2D) using harmonized AutoDock Vina parameters. Ligand standardization and receptor preparation followed conventional protocols. <b>Results</b>: The most favorable docking scores reached -10.7 kcal·mol<sup>-1</sup> for 3AIC and -8.9 kcal·mol<sup>-1</sup> for 3U2D. Redocking produced pose RMSD values of 1.52 Å (3AIC) and 0.96 Å (3U2D). Per-receptor ADMET profiles for the six top-ranked compounds indicated median logP values of 4.93 (3AIC) and 4.52 (3U2D), median TPSA values of 80.3 and 62.9 Å<sup>2</sup>, median rotatable bonds of 2.5 and 1.0, and median QED values of 0.41 and 0.76, respectively. <b>Conclusions</b>: An integrated, dual-target screen prioritized neem constituents with plausible local anti-cariogenic activity and physicochemical features compatible with systemic disposition. These in silico findings motivate targeted experimental validation.

BiomedicinesVol. 13(9)
University of Zululand (ZA), Ekiti State University (NG), University of Waterloo (CA), Afe Babalola University (NG), Babcock University (NG), Achievers University (NG)
University of Zululand
Openalex Percentile: Top 19%
Biochemical Analysis and Sensing Techniques
1.12
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