Modification of biochar by iron containing adsorption centers as a method to enhance the remediation of perfluorooctanoic (PFOA) and (PFOS) acids from water and soil: a density functional theory study

A doubled crystallographic unit of hematite (Fe₂₄O₃₆) was constructed and fully optimized using density functional theory (DFT) with the M06-2X functional. Geometry optimization used the 6-31G(d,p) basis set, while single-point energies were calculated with 6-311 + + G(d,p). Antiferromagnetic conditions were ensured by setting the total spin to zero (Sz = 0), and triplet instability analysis was performed to evaluate ferromagnetic potential. To simulate bulk water effects on adsorption, the CPCM solvation model (ε = 78.3) was applied. Harmonic frequency analysis confirmed structural minima, and Gibbs free energies were calculated using Gaussian 16. PFOA and PFOS, with highly negative pKa values (~ -0.1 and <). Quadratic SCF convergence (scf = qc) addressed numerical challenges, and interaction energies were corrected for basis set superposition error using the counterpoise method. Calculated IR spectra and molecular visualizations were generated with Chemcraft, without applying scaling factors.

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Publication Details

Journal
Journal of Molecular Modeling
Published
2025-09-13
DOI
https://doi.org/10.1007/s00894-025-06491-9
Primary Topic
Per- and polyfluoroalkyl substances research
Type
article
Field-Weighted Citation Impact
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article

Modification of biochar by iron containing adsorption centers as a method to enhance the remediation of perfluorooctanoic (PFOA) and (PFOS) acids from water and soil: a density functional theory study

Danuta Leszczyńska, Tomasz Puzyn, Natalia Buławska, Anita Sosnowska et al.
Journal of Molecular Modeling
Per- and polyfluoroalkyl substances research
article

Modification of biochar by iron containing adsorption centers as a method to enhance the remediation of perfluorooctanoic (PFOA) and (PFOS) acids from water and soil: a density functional theory study

Danuta Leszczyńska, Tomasz Puzyn, Natalia Buławska, Anita Sosnowska, Leonid Gorb, Jerzy Leszczynski
article en

Abstract

A doubled crystallographic unit of hematite (Fe₂₄O₃₆) was constructed and fully optimized using density functional theory (DFT) with the M06-2X functional. Geometry optimization used the 6-31G(d,p) basis set, while single-point energies were calculated with 6-311 + + G(d,p). Antiferromagnetic conditions were ensured by setting the total spin to zero (Sz = 0), and triplet instability analysis was performed to evaluate ferromagnetic potential. To simulate bulk water effects on adsorption, the CPCM solvation model (ε = 78.3) was applied. Harmonic frequency analysis confirmed structural minima, and Gibbs free energies were calculated using Gaussian 16. PFOA and PFOS, with highly negative pKa values (~ -0.1 and <). Quadratic SCF convergence (scf = qc) addressed numerical challenges, and interaction energies were corrected for basis set superposition error using the counterpoise method. Calculated IR spectra and molecular visualizations were generated with Chemcraft, without applying scaling factors.

Journal of Molecular ModelingVol. 31(10)
University of Gdańsk (PL), Gdańska Wyższa Szkoła Humanistyczna (PL), Jackson State University (US), Institute of Molecular Biology and Genetics (UA)
Openalex Percentile: Top 79%
Per- and polyfluoroalkyl substances research
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