SPACE: STRING proteins as complementary embeddings
The source code and scripts for generating the network-based cross-species protein embeddings are available at https://github.com/deweihu96/SPACE. Precomputed network embeddings and sequence embeddings for all eukaryotic proteins are included in STRING version 12.0 (https://string-db.org/cgi/download).
Authors
- Christian von Mering (ORCID: https://orcid.org/0000-0001-7734-9102)
- Lars Juhl Jensen (ORCID: https://orcid.org/0000-0001-7885-715X)
- Damian Szklarczyk (ORCID: https://orcid.org/0000-0002-4052-5069)
- Dewei Hu (ORCID: https://orcid.org/0009-0005-5823-1498)
Institutions
- SIB Swiss Institute of Bioinformatics (CH)
- University of Zurich (CH)
- Novo Nordisk Foundation (DK)
- Life Science Zurich (CH)
- Danish Geotechnical Society (DK)
Publication Details
- Journal
- Bioinformatics
- Published
- 2025-09-01
- DOI
- https://doi.org/10.1093/bioinformatics/btaf496
- Citations
- 3
- Primary Topic
- Machine Learning in Bioinformatics
- Type
- article
- Field-Weighted Citation Impact
- 2.42
Funders
- Novo Nordisk
- China Scholarship Council
- Danish e-Infrastructure Cooperation
- Novo Nordisk Fonden