IN SILICO INVESTIGATION OF MOLECULAR INTERACTIONS BETWEEN INULOSUCRASE DERIVED FROM Aspergillus awamori AND EPE COMPOUNDS

Fructooligosaccharides (FOS) are important prebiotics synthesized by the enzymatic activity of inulosucrase, and understanding their molecular interactions is essential for exploring potential modulators. This study examined the interaction between inulosucrase from Aspergillus awamori (PDB ID: 1Y4W) and the compound EPE (4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid) using an in silico molecular docking approach. Since the 1Y4W structure lacks a co-crystallized ligand, EPE was selected as a surrogate ligand derived from PDB ID: 3SC7 and prepared for docking simulations. Docking with AutoDock Vina produced a best binding affinity of "“5.6 kcal/mol, with the strongest hydrogen bond observed with TRP305 (1.92 Ã…) and additional interactions with TYR279 (3.75 Ã…). These results indicate a moderate but stable interaction, weaker than the native substrate fructose reported in crystallographic studies. Overall, EPE shows potential as a modulatory compound of inulosucrase activity and provides a basis for further enzymological and biotechnological research.

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Publication Details

Journal
Indonesian Journal of Pure and Applied Chemistry
Published
2025-08-31
DOI
https://doi.org/10.26418/indonesian.v8i2.96978
Primary Topic
Enzyme Production and Characterization
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article
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article

IN SILICO INVESTIGATION OF MOLECULAR INTERACTIONS BETWEEN INULOSUCRASE DERIVED FROM Aspergillus awamori AND EPE COMPOUNDS

Baiq Desy Ratnasari, Gladeva Yugi Antari, Emmy Yuanita, Diah Miftahul Aini et al.
Indonesian Journal of Pure and Applied Chemistry
Enzyme Production and Characterization
article

IN SILICO INVESTIGATION OF MOLECULAR INTERACTIONS BETWEEN INULOSUCRASE DERIVED FROM Aspergillus awamori AND EPE COMPOUNDS

Baiq Desy Ratnasari, Gladeva Yugi Antari, Emmy Yuanita, Diah Miftahul Aini, Eva Hikmatul Damayanti, Elza Kamila Fajriati
article en

Abstract

Fructooligosaccharides (FOS) are important prebiotics synthesized by the enzymatic activity of inulosucrase, and understanding their molecular interactions is essential for exploring potential modulators. This study examined the interaction between inulosucrase from Aspergillus awamori (PDB ID: 1Y4W) and the compound EPE (4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid) using an in silico molecular docking approach. Since the 1Y4W structure lacks a co-crystallized ligand, EPE was selected as a surrogate ligand derived from PDB ID: 3SC7 and prepared for docking simulations. Docking with AutoDock Vina produced a best binding affinity of "“5.6 kcal/mol, with the strongest hydrogen bond observed with TRP305 (1.92 Ã…) and additional interactions with TYR279 (3.75 Ã…). These results indicate a moderate but stable interaction, weaker than the native substrate fructose reported in crystallographic studies. Overall, EPE shows potential as a modulatory compound of inulosucrase activity and provides a basis for further enzymological and biotechnological research.

Indonesian Journal of Pure and Applied ChemistryVol. 8(2)
University of Mataram (ID), Hasanuddin University (ID)
Openalex Percentile: Top 74%
Enzyme Production and Characterization
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