Iso-seq and RNA-seq data from ML-2 acute myeloid leukemia cells overexpressing the ZCCHC10 gene

ZCCHC10 (zinc finger CCHC-type containing 10) has been shown to play a tumor suppressive role in acute myeloid leukemia (AML), but the underlying mechanism is not clear. Many ZCCHC proteins are involved in RNA metabolism, such as synthesis, splicing and stability of RNA. To investigate the role of ZCCHC10 in RNA metabolism, we performed PacBio single-molecule long-read isoform sequencing (Iso-seq) and Illumina short-read RNA sequencing (RNA-seq) on ML-2 cells stably overexpressing ZCCHC10 (designated ML2T) and stably overexpressing an empty vector (designated ML2C). The Iso-seq data consists of full-length transcripts from ML2T and ML2C and can be used by researchers to identify mRNA isoforms and decipher the events of alternative processing, including alternative transcription initiation, alternative splicing, and alternative polyadenylation. The RNA-seq data provides the transcript profiles from ML2T and ML2C and can be used by researchers to study the effects of overexpression of ZCCHC10 on gene expression. Integrated analysis of RNA-seq and Iso-seq datasets can reveal the impact of ZCCHC10 overexpression on alternative processing in AML.

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Publication Details

Journal
Data in Brief
Published
2025-09-05
DOI
https://doi.org/10.1016/j.dib.2025.112048
Citations
1
Primary Topic
RNA modifications and cancer
Type
article
Field-Weighted Citation Impact
0.81

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article

Iso-seq and RNA-seq data from ML-2 acute myeloid leukemia cells overexpressing the ZCCHC10 gene

Jianlin Zhou, Yichong Ning, Hao Zhou
1 citations
Data in Brief
RNA modifications and cancer
0.81
article

Iso-seq and RNA-seq data from ML-2 acute myeloid leukemia cells overexpressing the ZCCHC10 gene

Jianlin Zhou, Yichong Ning, Hao Zhou
article en
1 citations

Abstract

ZCCHC10 (zinc finger CCHC-type containing 10) has been shown to play a tumor suppressive role in acute myeloid leukemia (AML), but the underlying mechanism is not clear. Many ZCCHC proteins are involved in RNA metabolism, such as synthesis, splicing and stability of RNA. To investigate the role of ZCCHC10 in RNA metabolism, we performed PacBio single-molecule long-read isoform sequencing (Iso-seq) and Illumina short-read RNA sequencing (RNA-seq) on ML-2 cells stably overexpressing ZCCHC10 (designated ML2T) and stably overexpressing an empty vector (designated ML2C). The Iso-seq data consists of full-length transcripts from ML2T and ML2C and can be used by researchers to identify mRNA isoforms and decipher the events of alternative processing, including alternative transcription initiation, alternative splicing, and alternative polyadenylation. The RNA-seq data provides the transcript profiles from ML2T and ML2C and can be used by researchers to study the effects of overexpression of ZCCHC10 on gene expression. Integrated analysis of RNA-seq and Iso-seq datasets can reveal the impact of ZCCHC10 overexpression on alternative processing in AML.

Data in BriefVol. 62
Changsha Medical University (CN), Hunan Normal University (CN), Affiliated Hospital of Youjiang Medical University for Nationalities (CN)
National Natural Science Foundation of China, Natural Science Foundation of Guangxi Province
Openalex Percentile: Top 24%
RNA modifications and cancer
0.81
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Iso-seq and RNA-seq data from ML-2 acute myeloid leukemia cells overexpressing the ZCCHC10 gene — Jianlin Zhou, Yichong Ning, et al. · Data in Brief (2025) | TGRS Research Map | TGRS