Coordinate: An Android application to organize samples into grids

Efficient and accurate sample organization is one of the most important aspects of modern biological science.Coordinate is an Android application that is used to organize sample identifiers into virtual grids.Sample identifiers are collected via text or barcode into individual cells that are structured in a Cartesian coordinate grid.Grids inherit properties from user-defined templates including their dimensions, row and column naming, metadata fields, and any specific cells to exclude from data entry.Grids are exported as CSV files that are easily integrated into downstream analysis pipelines since metadata fields are user-defined.Grids can also be grouped into projects and exported as a single ZIP file.Coordinate can be further customized with options to change the direction of cell procession for data input, add notification sounds, input random blank cells for quality control, and adjust the level of uniqueness required for incoming sample identifiers.Two default templates are included with Coordinate: DNA Plate and Seed Tray.Although other tools exist to design grids for activities like tissue collection (Vollbrecht, n.d.), Coordinate takes a unique approach of "sampling as you go", which does not assign specific samples to specific cells before the samples are collected.This approach can help to minimize mistakes since matching an identifier is not required before collecting a sample and missing samples do not need to be manually replaced in the sampling interface.Furthermore, the customizability of Coordinate allows it to be adapted to many different use cases or needs.

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Publication Details

Journal
The Journal of Open Source Software
Published
2025-09-04
DOI
https://doi.org/10.21105/joss.08263
Primary Topic
Context-Aware Activity Recognition Systems
Type
article
Field-Weighted Citation Impact
0.00

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article

Coordinate: An Android application to organize samples into grids

Bryan J. Ellerbrock, Chaney Courtney, Trevor W. Rife, Jesse Poland et al.
The Journal of Open Source Software
Context-Aware Activity Recognition Systems
article

Coordinate: An Android application to organize samples into grids

Bryan J. Ellerbrock, Chaney Courtney, Trevor W. Rife, Jesse Poland, Prasad Kamath
article en

Abstract

Efficient and accurate sample organization is one of the most important aspects of modern biological science.Coordinate is an Android application that is used to organize sample identifiers into virtual grids.Sample identifiers are collected via text or barcode into individual cells that are structured in a Cartesian coordinate grid.Grids inherit properties from user-defined templates including their dimensions, row and column naming, metadata fields, and any specific cells to exclude from data entry.Grids are exported as CSV files that are easily integrated into downstream analysis pipelines since metadata fields are user-defined.Grids can also be grouped into projects and exported as a single ZIP file.Coordinate can be further customized with options to change the direction of cell procession for data input, add notification sounds, input random blank cells for quality control, and adjust the level of uniqueness required for incoming sample identifiers.Two default templates are included with Coordinate: DNA Plate and Seed Tray.Although other tools exist to design grids for activities like tissue collection (Vollbrecht, n.d.), Coordinate takes a unique approach of "sampling as you go", which does not assign specific samples to specific cells before the samples are collected.This approach can help to minimize mistakes since matching an identifier is not required before collecting a sample and missing samples do not need to be manually replaced in the sampling interface.Furthermore, the customizability of Coordinate allows it to be adapted to many different use cases or needs.

The Journal of Open Source SoftwareVol. 10(113)
King Abdullah University of Science and Technology (SA), Clemson University (US)
National Science Foundation, United States Agency for International Development
Openalex Percentile: Top 77%
Context-Aware Activity Recognition Systems
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Coordinate: An Android application to organize samples into grids — Bryan J. Ellerbrock, Chaney Courtney, et al. · The Journal of Open Source Software (2025) | TGRS Research Map | TGRS