A novel linear indexing method for strings under all internal nodes in a suffix tree

Suffix trees are fundamental data structures in stringology and have wide applications across various domains. In this work, we propose two linear-time algorithms for indexing strings under each internal node in a suffix tree while preserving the ability to track similarities and redundancies across different internal nodes. This is achieved through a novel tree structure derived from the suffix tree, along with new indexing concepts. The resulting indexes offer practical solutions in several areas, including DNA sequence analysis and approximate pattern matching.

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Publication Details

Journal
Frontiers in Bioinformatics
Published
2025-09-04
DOI
https://doi.org/10.3389/fbinf.2025.1577324
Primary Topic
Algorithms and Data Compression
Type
article
Field-Weighted Citation Impact
0.00

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article

A novel linear indexing method for strings under all internal nodes in a suffix tree

Abdelghani Tbakhi, Anas Al-okaily
Frontiers in Bioinformatics
Algorithms and Data Compression
article

A novel linear indexing method for strings under all internal nodes in a suffix tree

Abdelghani Tbakhi, Anas Al-okaily
article en

Abstract

Suffix trees are fundamental data structures in stringology and have wide applications across various domains. In this work, we propose two linear-time algorithms for indexing strings under each internal node in a suffix tree while preserving the ability to track similarities and redundancies across different internal nodes. This is achieved through a novel tree structure derived from the suffix tree, along with new indexing concepts. The resulting indexes offer practical solutions in several areas, including DNA sequence analysis and approximate pattern matching.

Frontiers in BioinformaticsVol. 5
King Hussein Cancer Center (JO), McMaster University (CA)
University of Connecticut
Openalex Percentile: Top 88%
Algorithms and Data Compression
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