Advancing causal inference in ecology: Pathways for biodiversity change detection and attribution

Abstract Understanding the causes of biodiversity change is essential for addressing environmental challenges. While causal attribution has advanced in other fields, ecologists remain cautious about causal claims or misinterpret predictive models as causal. With growing spatio‐temporal data, computational power and cross‐disciplinary collaboration, discussions on improving attribution methods in ecology are gaining momentum. However, practical guidance remains limited for non‐experts. Here, we identify the challenges and decisions involved in detecting and attributing biodiversity change and provide an overview of suitable methods based on available data and specific research questions. The first challenge we address pertains to biodiversity and driver data. Unlike controlled experimental data in other disciplines, ecological data often stem from monitoring programs or field samplings with varying degrees of rigour, which complicates the analysis due to sampling biases, interacting drivers, measurement error or spatio‐temporal variations. We specifically outline how data structure (e.g. structured vs. opportunistic data) and data coverage along the spatial and temporal scale impact detection and attribution. The second challenge involves the ability to detect directional change in the system of interest, which is associated with numerous hurdles. We provide an overview of the most relevant approaches to deal with sampling variability, gaps and biases in the data, non‐linearity in the temporal trends and to identify the most appropriate spatio‐temporal resolution. For the third challenge, causal attribution, we focus on data‐driven approaches. We review recent frameworks that draw on methodologies from other disciplines, offering analytical roadmaps and step‐by‐step guidance for causal inference. These include constructing theoretical causal models a priori, full causal models based on data and theory and posterior causal interpretation tailored to specific data and research questions. Moving forward, it is essential to foster interdisciplinary collaboration to adapt and refine methodologies from other fields, ensure robust data collection and sharing practices, promote the integration of advanced computational tools and improve the link between data‐driven and theory‐driven approaches. This approach will enhance our ability to make robust causal inferences; thereby improving our understanding of biodiversity changes and informing effective conservation strategies.

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Publication Details

Journal
Methods in Ecology and Evolution
Published
2025-09-04
DOI
https://doi.org/10.1111/2041-210x.70131
Citations
10
Primary Topic
Advanced Causal Inference Techniques
Type
article
Field-Weighted Citation Impact
26.30

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article

Advancing causal inference in ecology: Pathways for biodiversity change detection and attribution

Colin Fontaine, Luca Santini, Diana E. Bowler, Pierre Gaüzère et al.
10 citations
Methods in Ecology and Evolution
Advanced Causal Inference Techniques
26.30
article

Advancing causal inference in ecology: Pathways for biodiversity change detection and attribution

Colin Fontaine, Luca Santini, Diana E. Bowler, Pierre Gaüzère, Miriam Beck, Inês S. Martins, Naia Morueta‐Holme, Sara Si‐Moussi, Franziska Schrodt, Matthias Grenié, Emmanuelle Porcher, Wilfried Thuiller, Cyrille Violle, Gabrielle Martin, Grant Vernham, Mickaël Hedde, Marianne Tzivanopoulos, Joaquim Estopinan, Romain Goury
article en
10 citations

Abstract

Abstract Understanding the causes of biodiversity change is essential for addressing environmental challenges. While causal attribution has advanced in other fields, ecologists remain cautious about causal claims or misinterpret predictive models as causal. With growing spatio‐temporal data, computational power and cross‐disciplinary collaboration, discussions on improving attribution methods in ecology are gaining momentum. However, practical guidance remains limited for non‐experts. Here, we identify the challenges and decisions involved in detecting and attributing biodiversity change and provide an overview of suitable methods based on available data and specific research questions. The first challenge we address pertains to biodiversity and driver data. Unlike controlled experimental data in other disciplines, ecological data often stem from monitoring programs or field samplings with varying degrees of rigour, which complicates the analysis due to sampling biases, interacting drivers, measurement error or spatio‐temporal variations. We specifically outline how data structure (e.g. structured vs. opportunistic data) and data coverage along the spatial and temporal scale impact detection and attribution. The second challenge involves the ability to detect directional change in the system of interest, which is associated with numerous hurdles. We provide an overview of the most relevant approaches to deal with sampling variability, gaps and biases in the data, non‐linearity in the temporal trends and to identify the most appropriate spatio‐temporal resolution. For the third challenge, causal attribution, we focus on data‐driven approaches. We review recent frameworks that draw on methodologies from other disciplines, offering analytical roadmaps and step‐by‐step guidance for causal inference. These include constructing theoretical causal models a priori, full causal models based on data and theory and posterior causal interpretation tailored to specific data and research questions. Moving forward, it is essential to foster interdisciplinary collaboration to adapt and refine methodologies from other fields, ensure robust data collection and sharing practices, promote the integration of advanced computational tools and improve the link between data‐driven and theory‐driven approaches. This approach will enhance our ability to make robust causal inferences; thereby improving our understanding of biodiversity changes and informing effective conservation strategies.

Methods in Ecology and EvolutionVol. 16(10)
University of Copenhagen (DK), Centre National de la Recherche Scientifique (FR), University of Nottingham (GB), École Pratique des Hautes Études (FR), Université Fédérale de Toulouse Midi-Pyrénées (FR), Université de Montpellier (FR), Charles Darwin University (AU), Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement (FR), Centre d'Écologie Fonctionnelle et Évolutive (FR), UK Centre for Ecology & Hydrology (GB), Centre d'Écologie et des Sciences de la Conservation (FR), Muséum national d'Histoire naturelle (FR), Institut Agro Montpelier (FR), Laboratoire d'Écologie Alpine (FR), Services déconcentrés d'appui à la recherche Occitanie-Montpellier (FR), Institut de Recherche pour le Développement (FR), Structure et Instabilité des Génomes (FR), University of York (GB), Université Savoie Mont Blanc (FR), Sapienza University of Rome (IT), Université Grenoble Alpes (FR)
Villum Fonden, Royal Society, Fondation pour la Recherche sur la Biodiversite, Danmarks Frie Forskningsfond, HORIZON EUROPE Framework Programme, Natural Environment Research Council
Openalex Percentile: Top 0%
Advanced Causal Inference Techniques
26.30
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