The Identification of Gyrophoric Acid, a Phytochemical Derived from Lichen, as a Potent Inhibitor for Aggregation of Amyloid Beta Peptide: In Silico and Biochemical Evaluation

Alzheimer's disease (AD) is characterized by amyloid-beta (Aβ) plaque accumulation and neurodegeneration. This study identified gyrophoric acid, a lichen-derived phenolic metabolite, as a dual-action Aβ42 inhibitor preventing aggregation and disassembling of mature Aβ42 fibrils. Integrated in silico studies revealed that gyrophoric acid was a strong thermodynamic stabilizer of Aβ42 (MM-GBSA: -27.3 kcal/mol) via entropically driven hydrophobic interactions and disruption of aggregation-prone conformations (100 ns MD simulations). Through biochemical analysis of the fluorescent dye thioflavin T (ThT), gyrophoric acid induced rapid Aβ42 fibril disassembly within 5 h, with time-lapse confocal microscopy quantitatively confirming the near-complete dissolution of large aggregates by 24 h. ADMET profiling revealed favorable pharmacokinetics (moderate oral absorption: 48.5-57.3%; low toxicity) and Lipinski's rule compliance. These results establish gyrophoric acid as a promising natural bioactive compound for anti-AD therapeutics with a unique hydrophobic-stabilization mechanism.

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Journal
International Journal of Molecular Sciences
Published
2025-09-01
DOI
https://doi.org/10.3390/ijms26178500
Primary Topic
Computational Drug Discovery Methods
Type
article
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article

The Identification of Gyrophoric Acid, a Phytochemical Derived from Lichen, as a Potent Inhibitor for Aggregation of Amyloid Beta Peptide: In Silico and Biochemical Evaluation

Meixia Yang, Karl Wah Keung Tsim, Ka Wing Leung, Jin Gao et al.
International Journal of Molecular Sciences
Computational Drug Discovery Methods
article

The Identification of Gyrophoric Acid, a Phytochemical Derived from Lichen, as a Potent Inhibitor for Aggregation of Amyloid Beta Peptide: In Silico and Biochemical Evaluation

Meixia Yang, Karl Wah Keung Tsim, Ka Wing Leung, Jin Gao, Queenie Wing Sze Lai, Farkhod Eshboev, Qin Xu, Haitao Hu, Tina Ting-Xia Dong
article en

Abstract

Alzheimer's disease (AD) is characterized by amyloid-beta (Aβ) plaque accumulation and neurodegeneration. This study identified gyrophoric acid, a lichen-derived phenolic metabolite, as a dual-action Aβ42 inhibitor preventing aggregation and disassembling of mature Aβ42 fibrils. Integrated in silico studies revealed that gyrophoric acid was a strong thermodynamic stabilizer of Aβ42 (MM-GBSA: -27.3 kcal/mol) via entropically driven hydrophobic interactions and disruption of aggregation-prone conformations (100 ns MD simulations). Through biochemical analysis of the fluorescent dye thioflavin T (ThT), gyrophoric acid induced rapid Aβ42 fibril disassembly within 5 h, with time-lapse confocal microscopy quantitatively confirming the near-complete dissolution of large aggregates by 24 h. ADMET profiling revealed favorable pharmacokinetics (moderate oral absorption: 48.5-57.3%; low toxicity) and Lipinski's rule compliance. These results establish gyrophoric acid as a promising natural bioactive compound for anti-AD therapeutics with a unique hydrophobic-stabilization mechanism.

International Journal of Molecular SciencesVol. 26(17)
Academy of Sciences Republic of Uzbekistan (UZ), Xuzhou Medical College (CN), Hong Kong University of Science and Technology (HK), HKUST Shenzhen Research Institute (CN), Yunusov Institute of the Chemistry of Plant Substances (UZ)
Science, Technology and Innovation Commission of Shenzhen Municipality, Zhongshan Science and Technology Bureau
Openalex Percentile: Top 75%
Computational Drug Discovery Methods
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