Towards the genome-scale discovery of bivariate monotonic classifiers

We provide the first open-source implementation for learning BMCs, a Python implementation of fastBMC in particular, and Python code to reproduce the fastBMC results on real and simulated data in this paper, at https://github.com/oceanefrqt/fastBMC .

Authors

Carola Doerr (ORCID: https://orcid.org/0000-0002-4981-3227)
Martin S. Krejca (ORCID: https://orcid.org/0000-0002-1765-1219)
Benno Schwikowski (ORCID: https://orcid.org/0000-0001-5127-5619)
Océane Fourquet (ORCID: https://orcid.org/0000-0002-8072-8119)

Institutions

Centre National de la Recherche Scientifique (FR)
École Polytechnique (FR)
Institut Pasteur (FR)
Université Paris Cité (FR)
Sorbonne Université (FR)

Publication Details

Journal: BMC Bioinformatics
Published: 2025-09-02
DOI: https://doi.org/10.1186/s12859-025-06253-7
Primary Topic: Gene expression and cancer classification
Type: article
Field-Weighted Citation Impact: 0.00

Funders

Horizon 2020 Framework Programme

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article

Towards the genome-scale discovery of bivariate monotonic classifiers

Carola Doerr, Martin S. Krejca, Benno Schwikowski, Océane Fourquet

Sep 2, 2025

BMC Bioinformatics

Gene expression and cancer classification

article

Towards the genome-scale discovery of bivariate monotonic classifiers

Carola Doerr, Martin S. Krejca, Benno Schwikowski, Océane Fourquet

September 2, 2025article en

Abstract

We provide the first open-source implementation for learning BMCs, a Python implementation of fastBMC in particular, and Python code to reproduce the fastBMC results on real and simulated data in this paper, at https://github.com/oceanefrqt/fastBMC .

BMC BioinformaticsVol. 26(1)

Centre National de la Recherche Scientifique (FR), École Polytechnique (FR), Institut Pasteur (FR), Université Paris Cité (FR), Sorbonne Université (FR)

Horizon 2020 Framework Programme

Openalex Percentile: Top 79%

Gene expression and cancer classification

DOI Open Access PDF OpenAlex

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Towards the genome-scale discovery of bivariate monotonic classifiers — Carola Doerr, Martin S. Krejca, et al. · BMC Bioinformatics (2025) | TGRS Research Map | TGRS