The complete chloroplast genome of <i>Dioscorea tenuipes</i> Franch. &amp; Sav. and its phylogenetic analysis

Here, we present the first complete chloroplast genome of <i>D. tenuipes</i> (154,018 bp), which exhibits a typical quadripartite structure, including an LSC (83,966 bp), SSC (18,910 bp), and two IRs (25,571 bp each). A total of 133 genes were annotated, with 114 unique genes and 19 duplicated in the IRs. .Phylogenetic analyses based on complete chloroplast genomes of 13 <i>Stenophora</i> species strongly supported <i>D. tenuipes</i> as sister to <i>D. gracillima</i> (BS = 100%, PP = 1.0), challenging earlier studies that suggested a sister relationship with <i>D. tokoro</i> based on partial plastid sequences. Overall, this study provides a critical genomic resource for advancing research on the taxonomy, evolution, and medicinal breeding of <i>D. tenuipes</i>.

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Publication Details

Journal
Mitochondrial DNA Part B
Published
2025-09-02
DOI
https://doi.org/10.1080/23802359.2025.2556007
Primary Topic
Genomics and Phylogenetic Studies
Type
article
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article

The complete chloroplast genome of Dioscorea tenuipes Franch. & Sav. and its phylogenetic analysis

Jingpeng Zhao, Ruisen Lu, Min Chen, Fan Jiang et al.
Mitochondrial DNA Part B
Genomics and Phylogenetic Studies
article

The complete chloroplast genome of Dioscorea tenuipes Franch. & Sav. and its phylogenetic analysis

Jingpeng Zhao, Ruisen Lu, Min Chen, Fan Jiang, Zhiming Dai
article en

Abstract

Here, we present the first complete chloroplast genome of <i>D. tenuipes</i> (154,018 bp), which exhibits a typical quadripartite structure, including an LSC (83,966 bp), SSC (18,910 bp), and two IRs (25,571 bp each). A total of 133 genes were annotated, with 114 unique genes and 19 duplicated in the IRs. .Phylogenetic analyses based on complete chloroplast genomes of 13 <i>Stenophora</i> species strongly supported <i>D. tenuipes</i> as sister to <i>D. gracillima</i> (BS = 100%, PP = 1.0), challenging earlier studies that suggested a sister relationship with <i>D. tokoro</i> based on partial plastid sequences. Overall, this study provides a critical genomic resource for advancing research on the taxonomy, evolution, and medicinal breeding of <i>D. tenuipes</i>.

Mitochondrial DNA Part BVol. 10(10)
Institute of Botany (CN), Jiangmen Polytechnic (CN)
Openalex Percentile: Top 80%
Genomics and Phylogenetic Studies
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