Does the Presence of Sigma Holes Affect the Way Neutral Ligands Attach to a Halonium Cation?

This study explores the fundamental nature of interactions between halonium cations-modeled as fragments of real crystal structures-and Lewis bases, with hydrogen cyanide (HCN) serving as a representative ligand. Two types of halonium cation monomers, namely the iodonium ion of adamantylideneadamantane and ethynyl(phenyl)-λ<sup>3</sup>-iodane, along with their chlorine and bromine analogues, are examined. Complexes formed with HCN molecules are investigated using quantum chemical calculations and topological analyses of electron density. The findings indicate that the σ-hole plays a decisive role in directing both the geometry and strength of these noncovalent interactions. Systems featuring a single σ-hole exhibit reduced stabilization upon additional ligand coordination, often weakening the primary halogen bond. In contrast, cations with two σ-holes can accommodate up to three or four HCN molecules without compromising the integrity of the original halogen bonds. Nevertheless, the most favorable configuration remains the directional binding of two ligands to two distinct σ-holes.

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Publication Details

Journal
ChemPhysChem
Published
2025-09-01
DOI
https://doi.org/10.1002/cphc.202500357
Primary Topic
Crystallography and molecular interactions
Type
article
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Does the Presence of Sigma Holes Affect the Way Neutral Ligands Attach to a Halonium Cation?

Mariusz Michalczyk
ChemPhysChem
Crystallography and molecular interactions
article

Does the Presence of Sigma Holes Affect the Way Neutral Ligands Attach to a Halonium Cation?

Mariusz Michalczyk
article en

Abstract

This study explores the fundamental nature of interactions between halonium cations-modeled as fragments of real crystal structures-and Lewis bases, with hydrogen cyanide (HCN) serving as a representative ligand. Two types of halonium cation monomers, namely the iodonium ion of adamantylideneadamantane and ethynyl(phenyl)-λ<sup>3</sup>-iodane, along with their chlorine and bromine analogues, are examined. Complexes formed with HCN molecules are investigated using quantum chemical calculations and topological analyses of electron density. The findings indicate that the σ-hole plays a decisive role in directing both the geometry and strength of these noncovalent interactions. Systems featuring a single σ-hole exhibit reduced stabilization upon additional ligand coordination, often weakening the primary halogen bond. In contrast, cations with two σ-holes can accommodate up to three or four HCN molecules without compromising the integrity of the original halogen bonds. Nevertheless, the most favorable configuration remains the directional binding of two ligands to two distinct σ-holes.

ChemPhysChemVol. 26(20)
Wrocław University of Science and Technology (PL), AGH University of Krakow (PL)
Openalex Percentile: Top 78%
Crystallography and molecular interactions
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Does the Presence of Sigma Holes Affect the Way Neutral Ligands Attach to a Halonium Cation? — Mariusz Michalczyk · ChemPhysChem (2025) | TGRS Research Map | TGRS