scPOEM: robust co-embedding of peaks and genes revealing peak–gene regulation
The source code of scPOEM is available at https://github.com/Houyt23/scPOEM. The datasets can be obtained from the 10× Genomics (https://www.10xgenomics.com/datasets/pbmc-from-a-healthy-donor-granulocytes-removed-through-cell-sorting-10-k-1-standard-1-0-0) and GEO database under access codes GSE194122 and GSE239916.
Authors
- Yongjian Yang (ORCID: https://orcid.org/0000-0002-4135-5014)
- James J. Cai (ORCID: https://orcid.org/0000-0002-8081-6725)
- Yan Zhong (ORCID: https://orcid.org/0000-0003-2412-043X)
- Xinyue Zheng
- Yuntong Hou
Institutions
- East China Normal University (CN)
- Texas A&M University (US)
Publication Details
- Journal
- Bioinformatics
- Published
- 2025-09-01
- DOI
- https://doi.org/10.1093/bioinformatics/btaf483
- Primary Topic
- Single-cell and spatial transcriptomics
- Type
- article
- Field-Weighted Citation Impact
- 0.81
Funders
- National Natural Science Foundation of China