Silvicultural Practices Shape Fungal Diversity and Community Composition: Metabarcoding Study in a Pinus Forest in Central Mexico

Silvicultural practices significantly influence the diversity and composition of soil fungal communities, which play crucial roles in maintaining forest ecosystem functionality. This study evaluated the impact of three silvicultural treatments, consisting of liberation cutting, first thinning, and second thinning, on rhizospheric fungal and ectomycorrhizal (ECM) fungi communities in Pinus forests located in Puebla, Mexico. Using high-throughput metabarcoding of the internal transcribed spacer (ITS2) region, we identified 346 fungal genera across all treatments, with Ascomycota and Basidiomycota being the dominant phyla. Alpha diversity indices revealed a trend toward higher fungal richness for first thinning, followed by liberation cutting and lower values for second thinning. A beta diversity analysis demonstrated significant shifts in the fungal community composition across treatments, highlighting the influence of the thinning intensity. The proportions of different functional guilds were consistent across the treatments. However, compositional differences were observed, mainly in soil and wood saprotrophs and in pathogenic taxa. Liberation cutting showed enrichment in ECM taxa such as Russula and Cenococcum, whereas Tuber, Humaria, and Tricholoma were decreased for first thinning and Russula was decreased for second thinning. These findings underscore the need for sustainable forest management practices that balance productivity with the conservation of fungal biodiversity to ensure ecosystem stability and functionality.